- R/qtl2 Maps Error
issue opened 4 days ago by Frederick Muriuki Muriithi
- Production on tux04
issue opened 9 days ago by Pjotr Prins, last updated 5 days ago by Frederick Muriuki Muriithi; 10 of 12 tasks done
- Update production checklist
document created 9 days ago by Pjotr Prins, last updated 5 days ago by Frederick Muriuki Muriithi
- Precompute mapping input data
document created 4 weeks ago by Pjotr Prins, last updated 5 days ago by Frederick Muriuki Muriithi
- MariaDB
document created 9 days ago by Pjotr Prins, last updated 5 days ago by Frederick Muriuki Muriithi
- Using autossh to Keep SSH Tunnels Alive
document created 4 weeks ago by Alexander_Kabui, last updated 5 days ago by Frederick Muriuki Muriithi
- Machines
document created 9 days ago by Pjotr Prins, last updated 5 days ago by Frederick Muriuki Muriithi
- Deploying genecup
document created 4 weeks ago by Pjotr Prins, last updated 5 days ago by Frederick Muriuki Muriithi
- Setting Up or Migrating Production Across Machines
document created 5 weeks ago by Frederick Muriuki Muriithi, last updated 5 weeks ago by Frederick Muriuki Muriithi
- Generate Heatmaps Failing
issue opened on Oct 15 2024 by Frederick Muriuki Muriithi, last updated 6 weeks ago by Frederick Muriuki Muriithi
- Broken Collections Features
issue opened 6 weeks ago by Frederick Muriuki Muriithi, last updated 6 weeks ago by Frederick Muriuki Muriithi
- CTL Maps Error
issue opened 6 weeks ago by Frederick Muriuki Muriithi, last updated 6 weeks ago by Frederick Muriuki Muriithi
- Octopus/Tux maintenance
document created 6 weeks ago by AndreaGuarracino, last updated 6 weeks ago by AndreaGuarracino
- Tux04/Tux05 disk issues
issue opened on May 03 2024 by Pjotr Prins, last updated 7 weeks ago by Pjotr Prins; 12 of 12 tasks done
- Fix Display for the Time Consumed for Correlations
✓ issue opened 7 weeks ago by Frederick Muriuki Muriithi, last updated 7 weeks ago by Frederick Muriuki Muriithi
- UTHSC VPN with free software
document created on Aug 22 2022 by Arun Isaac, last updated 8 weeks ago by Pjotr Prins
- Backup Drops
document created on Oct 27 2022 by Pjotr Prins, last updated 8 weeks ago by Pjotr Prins
- Apps
issue opened on Nov 19 2024 by Pjotr Prins, last updated 8 weeks ago by Pjotr Prins; 33 of 74 tasks done
- Replace Redis with SQL
issue opened on Mar 12 2025 by Frederick Muriuki Muriithi
- Synchronising the Different Environments
document created on Mar 12 2025 by Frederick Muriuki Muriithi
- Production Container: `mechanical-rob` Failure
✓ issue opened on Feb 19 2025 by Frederick Muriuki Muriithi, last updated on Mar 10 2025 by Frederick Muriuki Muriithi
- Borg backups
document created on Feb 09 2025 by Pjotr Prins, last updated on Mar 06 2025 by Pjotr Prins
- OctoRAID
issue opened on Feb 28 2025 by Pjotr Prins
- Penguin2 RAID 5
issue opened on Feb 28 2025 by Pjotr Prins
- Installation
document created on Jun 18 2023 by Pjotr Prins, last updated on Feb 24 2025 by Pjotr Prins
- MariaDB Database Architecture
document created on Jun 29 2024 by Pjotr Prins, last updated on Feb 24 2025 by Pjotr Prins
- OntoGPT
document created on Feb 24 2025 by Pjotr Prins
- Aider
document created on Jan 17 2025 by Pjotr Prins, last updated on Feb 17 2025 by Pjotr Prins
- Rework Hard Dependence on Github
issue opened on Feb 14 2025 by Frederick Muriuki Muriithi, last updated on Feb 14 2025 by Frederick Muriuki Muriithi
- Rendering Images Linked in Markdown Documents
issue opened on Feb 11 2025 by Frederick Muriuki Muriithi
- GeneNetwork Releases
document created on Feb 10 2025 by Frederick Muriuki Muriithi
- CI/ CD for genetwork projects
document created on Oct 12 2022 by Munyoki Kilyungi, last updated on Jan 27 2025 by Pjotr Prins
- Fix Pairscan Mapping
issue opened on Jan 13 2025 by Alexander_Kabui
- Meeting Notes
document created on Jun 11 2024 by John Nduli, last updated on Jan 10 2025 by Munyoki Kilyungi
- Meeting Notes
document created on Jan 10 2025 by Munyoki Kilyungi
- Genenetwork Streaming Functionality
document created on Jan 10 2025 by Alexander_Kabui
- Investigate and Fix `rm` Command in `rqtl` Logs
issue opened on Jan 08 2025 by Alexander_Kabui, last updated on Jan 09 2025 by Munyoki Kilyungi; 4 of 6 tasks done
- Refresh Token Failure
issue opened on Jan 08 2025 by Frederick Muriuki Muriithi, last updated on Jan 08 2025 by Frederick Muriuki Muriithi
- Fix Broken Global Search UI
issue opened on Jan 07 2025 by Alexander_Kabui, last updated on Jan 07 2025 by Alexander_Kabui; 0 of 2 tasks done
- Testing performance
document created on Mar 08 2023 by Pjotr Prins, last updated on Dec 17 2024 by Pjotr Prins
- Fix Refresh Token
issue opened on Dec 05 2024 by Frederick Muriuki Muriithi
- DNS changes
document created on Sep 03 2022 by Pjotr Prins, last updated on Nov 22 2024 by Pjotr Prins
- Add (2nd) boot and other partitions
document created on Nov 19 2024 by Pjotr Prins, last updated on Nov 19 2024 by Pjotr Prins
- gn-guile Configurations
issue opened on Nov 18 2024 by Frederick Muriuki Muriithi; 1 of 1 tasks done
- Implementation of QTL Analysis Using r-qtl2 in GeneNetwork
document created on Nov 12 2024 by Alexander_Kabui, last updated on Nov 12 2024 by Alexander_Kabui
- RQTL Implementation for GeneNetwork Design Proposal
document created on Oct 15 2024 by Alexander_Kabui, last updated on Nov 12 2024 by Alexander_Kabui
- Cannot Connect to MariaDB
issue opened on Nov 05 2024 by Frederick Muriuki Muriithi, last updated on Nov 08 2024 by Frederick Muriuki Muriithi
- Python Requests Error in Container
✓ issue opened on Nov 01 2024 by Frederick Muriuki Muriithi, last updated on Nov 07 2024 by Frederick Muriuki Muriithi
- Handle Temporary Directories in the Container
✓ issue opened on Nov 01 2024 by Frederick Muriuki Muriithi, last updated on Nov 05 2024 by Frederick Muriuki Muriithi
- Containerising Production: Issues
✓ issue opened on Oct 26 2024 by Frederick Muriuki Muriithi, last updated on Nov 05 2024 by Frederick Muriuki Muriithi; 1 of 1 tasks done
- Markdown Editing Service: Not Deployed
issue opened on Oct 26 2024 by Frederick Muriuki Muriithi, last updated on Nov 01 2024 by Frederick Muriuki Muriithi
- GeneNetwork Services
document created on Oct 26 2024 by Frederick Muriuki Muriithi, last updated on Nov 01 2024 by Frederick Muriuki Muriithi
- Virtuoso: Shutdown Clears Data
✓ issue opened on Oct 28 2024 by Frederick Muriuki Muriithi, last updated on Oct 30 2024 by Frederick Muriuki Muriithi
- Set-up Virtuoso+Xapian on Production
✓ issue opened on Nov 22 2023 by Munyoki Kilyungi, last updated on Oct 28 2024 by Frederick Muriuki Muriithi; 1 of 1 tasks done
- Setup Mailing on Tux04
✓ issue opened on Oct 28 2024 by Frederick Muriuki Muriithi, last updated on Oct 28 2024 by Frederick Muriuki Muriithi
- MGAMMA design philosophy
issue opened on Apr 17 2024 by Pjotr Prins, last updated on Oct 27 2024 by Pjotr Prins
- UM-HET3 Timing: Slow
issue opened on Oct 26 2024 by Frederick Muriuki Muriithi, last updated on Oct 26 2024 by Frederick Muriuki Muriithi
- Handle OAuth Errors Better
issue opened on Oct 25 2024 by Frederick Muriuki Muriithi
- Replace Neo4J with Virtuoso
issue opened on Oct 22 2024 by Munyoki Kilyungi
- Set Up gn-guile in tux02
issue opened on Aug 29 2024 by Munyoki Kilyungi, last updated on Oct 22 2024 by Munyoki Kilyungi; 3 of 3 tasks done
- Update RDF Generation and Ingress to Virtuoso
issue opened on Oct 15 2024 by Munyoki Kilyungi, last updated on Oct 22 2024 by Munyoki Kilyungi
- Create Custom RIF XAPIAN Index
issue opened on Oct 16 2024 by Munyoki Kilyungi, last updated on Oct 22 2024 by Munyoki Kilyungi
- Broken Aliases
issue opened on Oct 21 2024 by Frederick Muriuki Muriithi, last updated on Oct 21 2024 by Frederick Muriuki Muriithi
- How to upgrade slurm on octopus
document created on Aug 29 2024 by Arun Isaac, last updated on Oct 18 2024 by Arun Isaac
- Restore backup
document created on Feb 07 2023 by Pjotr Prins, last updated on Oct 18 2024 by Frederick Muriuki Muriithi
- Check for Mandatory Settings
issue opened on Oct 18 2024 by Frederick Muriuki Muriithi; 0 of 3 tasks done
- Deploying Your Flask Application Under a URL Prefix With GUnicorn
document created on Oct 17 2024 by Frederick Muriuki Muriithi
- Error when loading GN2 with old pre-update session
✓ issue opened on Jun 03 2024 by Zachary Sloan, last updated on Oct 17 2024 by Zachary Sloan
- Fix Xapian search bug
✓ issue opened on Jun 07 2024 by Zachary Sloan, last updated on Oct 17 2024 by Zachary Sloan
- The * Search for Genotypes Not Working
✓ issue opened on Sep 17 2024 by Zachary Sloan, last updated on Oct 17 2024 by Zachary Sloan
- Set up Guix for new users
document created on Oct 17 2024 by Arun Isaac, last updated on Oct 17 2024 by Arun Isaac
- Updating Guix profiles (for production and development)
document created on Jun 14 2022 by Arun Isaac, last updated on Oct 17 2024 by Arun Isaac
- Redirect Users to the Correct URL on Login for GN2
✓ issue opened on Sep 17 2024 by Alexander_Kabui, last updated on Oct 16 2024 by Alexander_Kabui; 2 of 2 tasks done
- GNQA Integration to Global Search Design Proposal
✓ issue opened on Sep 02 2024 by Alexander_Kabui, last updated on Oct 16 2024 by Alexander_Kabui; 9 of 9 tasks done
- Cleanup GN2 Base HTML File
✓ issue opened on Sep 23 2024 by Alexander_Kabui, last updated on Oct 16 2024 by Alexander_Kabui; 3 of 3 tasks done
- Redesign Global Search Design
✓ issue opened on Sep 26 2024 by Alexander_Kabui, last updated on Oct 16 2024 by Alexander_Kabui; 2 of 2 tasks done
- Edit RIF Metadata in GN2
✓ issue opened on Jul 29 2024 by Munyoki Kilyungi, last updated on Oct 15 2024 by Munyoki Kilyungi; 15 of 15 tasks done
- R/qtl2
document created on Oct 07 2024 by Pjotr Prins
- topics/lmms/bulklmm/readme.gmi
document created on Oct 07 2024 by Pjotr Prins
- BioHackRxiv
document created on Oct 07 2024 by Pjotr Prins
- Permutations
document created on Aug 18 2024 by Pjotr Prins, last updated on Oct 07 2024 by Pjotr Prins
- Resources: Duplicates in Resources List
✓ issue opened on Oct 03 2024 by Frederick Muriuki Muriithi, last updated on Oct 03 2024 by Frederick Muriuki Muriithi
- Example Python script for setting privileges for user/group
issue opened on Oct 03 2024 by Zachary Sloan
- [gn3/ADR-002] Move RDF Test Cases to Build Container
document created on Sep 30 2024 by Munyoki Kilyungi, last updated on Oct 02 2024 by Munyoki Kilyungi
- [gn3/ADR-001] Remove Stack Traces in GN3
document created on Sep 10 2024 by Munyoki Kilyungi, last updated on Sep 30 2024 by Munyoki Kilyungi
- Using Architecture Decision Records at GeneNetwork
document created on Sep 25 2024 by Munyoki Kilyungi, last updated on Sep 25 2024 by Munyoki Kilyungi
- Genotypes, Assemblies, Markers and GeneNetwork
document created on Sep 23 2024 by Frederick Muriuki Muriithi
- Working with Virtuoso for Local Development
document created on Sep 20 2024 by Munyoki Kilyungi, last updated on Sep 20 2024 by Munyoki Kilyungi
- Xapian indexing
document created on Oct 30 2022 by Arun Isaac, last updated on Sep 20 2024 by Munyoki Kilyungi
- Virtuoso
document created on Aug 27 2021 by Pjotr Prins, last updated on Sep 20 2024 by Munyoki Kilyungi
- [gn-transform-databases/ADR-002] Remodel GeneRIF_BASIC (NCBI RIFs) Metadata To Be More Compact
document created on Sep 20 2024 by Munyoki Kilyungi
- [gn-transform-databases/ADR-001] Remodel GeneRIF_BASIC (NCBI RIFs) Metadata Using predicateObject Lists
document created on Sep 07 2024 by Munyoki Kilyungi, last updated on Sep 20 2024 by Munyoki Kilyungi
- [gn-transform-databases/ADR-000] Remodel GeneRIF Metadata Using predicateObject Lists
document created on Sep 07 2024 by Munyoki Kilyungi, last updated on Sep 20 2024 by Munyoki Kilyungi
- GEMMA output differs from R/qtl2
✓ issue opened on Aug 01 2024 by Pjotr Prins, last updated on Sep 20 2024 by Pjotr Prins
- [gn3/ADR-000] Add RDF Test Cases
document created on Sep 10 2024 by Munyoki Kilyungi, last updated on Sep 19 2024 by Munyoki Kilyungi
- [gn-guile/ADR-000] Extend Markdown Editor to push to Git Bare Repo
document created on Sep 04 2024 by Munyoki Kilyungi, last updated on Sep 19 2024 by Munyoki Kilyungi
- Explanation of how Sample Lists are handled in GN2 (and may be handled moving forward)
issue opened on Sep 19 2024 by Zachary Sloan
- Uploading Samples
issue opened on Sep 18 2024 by Frederick Muriuki Muriithi, last updated on Sep 19 2024 by Frederick Muriuki Muriithi
- New Privileges: Samples Ordering
issue opened on Sep 19 2024 by Frederick Muriuki Muriithi
- Various UI issues raised by Rob (8/19/2024)
issue opened on Aug 19 2024 by Zachary Sloan, last updated on Sep 18 2024 by Zachary Sloan; 12 of 13 tasks done
- Feature Request: Create Test Accounts
issue opened on Sep 16 2024 by Frederick Muriuki Muriithi, last updated on Sep 17 2024 by Frederick Muriuki Muriithi
- Quality Control of Data in Uploaded R/qtl2 Bundles
✓ issue opened on Feb 02 2024 by Frederick Muriuki Muriithi, last updated on Sep 16 2024 by Frederick Muriuki Muriithi; 10 of 15 tasks done
- gn-uploader container: Running wrong genenetwork2
✓ issue opened on Mar 18 2024 by Frederick Muriuki Muriithi, last updated on Sep 16 2024 by Frederick Muriuki Muriithi
- Send out Confimation Emails on Registration
✓ issue opened on Feb 27 2024 by Frederick Muriuki Muriithi, last updated on Sep 16 2024 by Frederick Muriuki Muriithi
- E-Mail Verification
✓ issue opened on Jun 04 2024 by Zachary Sloan, last updated on Sep 16 2024 by Frederick Muriuki Muriithi
- Global Search: Unhandled Error
✓ issue opened on Mar 04 2024 by Frederick Muriuki Muriithi, last updated on Sep 16 2024 by Frederick Muriuki Muriithi
- GeneNetwork2: Account Registration Error
✓ issue opened on Mar 19 2024 by Frederick Muriuki Muriithi, last updated on Sep 16 2024 by Frederick Muriuki Muriithi
- Error Handling: External Errors
✓ issue opened on Jan 29 2024 by Frederick Muriuki Muriithi, last updated on Sep 16 2024 by Frederick Muriuki Muriithi
- Reset/Forgot Password Feature for GN2
✓ issue opened on May 15 2024 by Munyoki Kilyungi, last updated on Sep 16 2024 by Frederick Muriuki Muriithi
- Configurations
✓ issue opened on Jun 05 2023 by Frederick Muriuki Muriithi, last updated on Sep 16 2024 by Frederick Muriuki Muriithi
- Information about lizardfs, and some usage suggestions
document created on Jul 18 2021 by Pjotr Prins, last updated on Sep 12 2024 by Andrea Guarracino
- Paths in Flask Application
document created on Sep 11 2024 by Frederick Muriuki Muriithi
- Haley-Knott Regression Mapping Error
✓ issue opened on Sep 11 2024 by Frederick Muriuki Muriithi
- Refactoring gn-llm code and adding test modules
✓ issue opened on Jan 17 2024 by Alexander_Kabui, last updated on Sep 09 2024 by Alexander_Kabui
- Integrating gn-auth with gn-llm
✓ issue opened on Jan 10 2024 by Alexander_Kabui, last updated on Sep 09 2024 by Alexander_Kabui
- Fetch Pubmed data to GNQA
✓ issue opened on Feb 12 2024 by Alexander_Kabui, last updated on Sep 09 2024 by Alexander_Kabui; 6 of 6 tasks done
- Editing Case-Attributes
document created on Jul 07 2023 by Frederick Muriuki Muriithi, last updated on Sep 09 2024 by Munyoki Kilyungi
- Merge GNQA to Production
issue opened on Feb 12 2024 by Alexander_Kabui, last updated on Sep 09 2024 by Alexander_Kabui; 0 of 2 tasks done
- GN-LLM Integration
issue opened on Dec 12 2023 by Alexander_Kabui, last updated on Sep 09 2024 by Alexander_Kabui; 3 of 3 tasks done
- Implement Reference Rating for gn-llm
✓ issue opened on Jan 11 2024 by Alexander_Kabui, last updated on Sep 09 2024 by Alexander_Kabui; 2 of 2 tasks done
- GN2 Integration with LLM search using cached results
issue opened on Aug 26 2024 by John Nduli, last updated on Sep 09 2024 by Alexander_Kabui; 2 of 6 tasks done
- Implementing Efficient Database Caching for Query Responses in GN-LLM system
✓ issue opened on Jan 17 2024 by Alexander_Kabui, last updated on Sep 09 2024 by Alexander_Kabui; 3 of 3 tasks done
- Xapian to Text Transformer
issue opened on Sep 09 2024 by Alexander_Kabui
- Add Case Attributes to RDF
issue opened on Sep 03 2024 by Munyoki Kilyungi
- Deploy GeneNetwork
document created on Jan 18 2023 by Arun Isaac, last updated on Aug 27 2024 by Frederick Muriuki Muriithi
- Configuring Nginx on the Host System
document created on Aug 27 2024 by Frederick Muriuki Muriithi
- GN Markdown Editor Integration
issue opened on Jun 07 2024 by Alexander_Kabui, last updated on Aug 22 2024 by Alexander_Kabui; 9 of 10 tasks done
- Permission Hooks System Design
document created on Aug 20 2024 by John Nduli
- GN-AUTH FAQ
document created on Aug 19 2024 by John Nduli, last updated on Aug 19 2024 by John Nduli
- MGAMMA LMM
issue opened on Aug 19 2024 by Artyom Bologov; 3 of 5 tasks done
- R/qtl2 and GEMMA Format Notes
document created on Dec 27 2023 by Frederick Muriuki Muriithi, last updated on Aug 18 2024 by Pjotr Prins
- Mechanical Rob
document created on Aug 23 2022 by Arun Isaac, last updated on Aug 16 2024 by Munyoki Kilyungi
- Search Improvements: capital insensitive search for RIF+WIKI; Examples
issue opened on Mar 14 2023 by Arun Isaac, last updated on Aug 16 2024 by Munyoki Kilyungi
- Precompute steps
document created on May 07 2024 by Pjotr Prins, last updated on Aug 16 2024 by Pjotr Prins
- Setting Up a Basic Pre-Commit Hook for Linting Scheme Files
document created on Aug 07 2024 by Munyoki Kilyungi, last updated on Aug 07 2024 by Munyoki Kilyungi
- Setting up Local Development Database
document created on Aug 19 2022 by Frederick Muriuki Muriithi, last updated on Aug 01 2024 by Arun Isaac
- Inspect Discrepancies Between Xapian and SQL Search.
issue opened on Aug 01 2024 by Pjotr Prins
- Set password when virtuoso containers are rebuilt
issue opened on Jul 07 2023 by Munyoki Kilyungi, last updated on Jul 29 2024 by Munyoki Kilyungi
- Remove References to Old gn-auth code
issue opened on Feb 21 2024 by Munyoki Kilyungi, last updated on Jul 29 2024 by Munyoki Kilyungi
- Remove overrides to bootstrap classes in bootstrap-custom.css
issue opened on Mar 27 2024 by Munyoki Kilyungi, last updated on Jul 29 2024 by Munyoki Kilyungi
- Move Search to Xapian
✓ issue opened on Sep 08 2023 by Munyoki Kilyungi, last updated on Jul 29 2024 by Munyoki Kilyungi
- Move GN Racket Rest API to GNU Guile
issue opened on Jan 08 2024 by Munyoki Kilyungi, last updated on Jul 29 2024 by Munyoki Kilyungi
- Inspect Discrepancies Between Xapian and SQL Search.
✓ issue opened on Jul 10 2024 by Munyoki Kilyungi, last updated on Jul 29 2024 by Munyoki Kilyungi
- genenetwork2 CD sometimes fails to restart
✓ issue opened on Mar 17 2023 by Arun Isaac, last updated on Jul 29 2024 by Munyoki Kilyungi
- Edit Dataset Metadata
issue opened on Jan 10 2024 by Munyoki Kilyungi, last updated on Jul 29 2024 by Munyoki Kilyungi; 4 of 6 tasks done
- Add genotype file paths to RDF
issue opened on Jun 19 2023 by Munyoki Kilyungi, last updated on Jul 29 2024 by Munyoki Kilyungi
- Add Documentation For Set Up and Data Retrieval For AI Repo
✓ issue opened on Dec 01 2023 by Munyoki Kilyungi, last updated on Jul 29 2024 by Munyoki Kilyungi
- GeneNetwork Authentication/Authorisation Architecture
document created on Dec 04 2023 by Frederick Muriuki Muriithi, last updated on Jul 25 2024 by Frederick Muriuki Muriithi
- Rating System: No Indication for Login Requirement
issue opened on Jul 24 2024 by Solomon Shelby
- Get GNQA Ready for evaluation
issue opened on Mar 21 2024 by Solomon Shelby, last updated on Jul 24 2024 by Solomon Shelby; 2 of 2 tasks done
- Guides Vs References
document created on Jul 16 2024 by John Nduli, last updated on Jul 17 2024 by John Nduli
- Hash RDF Graph
✓ issue opened on Jun 10 2024 by Munyoki Kilyungi, last updated on Jul 10 2024 by Munyoki Kilyungi
- Provide Page/Link for/to Uploaded Data
issue opened on Jul 10 2024 by Frederick Muriuki Muriithi
- Types of Data in GeneNetwork
document created on Jul 02 2024 by Frederick Muriuki Muriithi, last updated on Jul 10 2024 by Frederick Muriuki Muriithi
- Improving RIF+WIKI Search
document created on Jul 04 2024 by Munyoki Kilyungi, last updated on Jul 05 2024 by Munyoki Kilyungi
- Mapping Error
issue opened on Jul 03 2024 by Frederick Muriuki Muriithi, last updated on Jul 03 2024 by Zachary Sloan
- Login issues with gn-auth
✓ issue opened on Mar 01 2024 by Pjotr Prins, last updated on Jul 03 2024 by Frederick Muriuki Muriithi
- Problem With Roles: Privilege Escalation
✓ issue opened on Jun 06 2024 by Frederick Muriuki Muriithi, last updated on Jul 03 2024 by Frederick Muriuki Muriithi; 8 of 8 tasks done
- Fix Flash Messages
✓ issue opened on Jan 05 2024 by Frederick Muriuki Muriithi, last updated on Jul 03 2024 by Frederick Muriuki Muriithi
- Move Uploader to tux02
✓ issue opened on Mar 12 2024 by Frederick Muriuki Muriithi, last updated on Jul 03 2024 by Frederick Muriuki Muriithi; 3 of 3 tasks done
- gn-uploader: Resume Upload
✓ issue opened on Jun 24 2024 by Frederick Muriuki Muriithi, last updated on Jul 03 2024 by Frederick Muriuki Muriithi; 4 of 4 tasks done
- Check Genotypes in the Database for R/qtl2 Uploads
✓ issue opened on Jun 26 2024 by Frederick Muriuki Muriithi, last updated on Jul 01 2024 by Frederick Muriuki Muriithi
- Genome Details
document created on Jul 01 2024 by Frederick Muriuki Muriithi
- Fallbacks and backups
issue opened on Aug 31 2021 by Pjotr Prins, last updated on Jun 28 2024 by Pjotr Prins; 3 of 25 tasks done
- Instrumenting RAM usage
document created on Jun 27 2024 by Munyoki Kilyungi
- Implement "Refresh Token" Feature for JWTs
✓ issue opened on Apr 26 2024 by Frederick Muriuki Muriithi, last updated on Jun 26 2024 by Frederick Muriuki Muriithi
- test1-auth.genenetwork.org Can't Find Templates
✓ issue opened on Mar 02 2024 by Frederick Muriuki Muriithi, last updated on Jun 26 2024 by Frederick Muriuki Muriithi
- Speed Up QC on R/qtl2 Bundles
issue opened on Jun 24 2024 by Frederick Muriuki Muriithi
- Link Authentication/Authorisation
issue opened on Jun 24 2024 by Frederick Muriuki Muriithi
- XAPIAN Search General Issues
issue opened on Jun 21 2024 by Munyoki Kilyungi
- Each shepherd service needs its own guix profile.
issue opened on Nov 03 2021 by Efraim Flashner, last updated on Jun 21 2024 by Pjotr Prins
- genecup is currently running as root on penguin2.
✓ issue opened on Aug 15 2021 by Efraim Flashner, last updated on Jun 21 2024 by Pjotr Prins
- Indicating Heterozygosity
document created on Jun 20 2024 by Frederick Muriuki Muriithi, last updated on Jun 20 2024 by Frederick Muriuki Muriithi
- ProbeSet not Applicable to All Data
issue opened on Jun 20 2024 by Frederick Muriuki Muriithi
- Logging Handler Improvements for GN3
issue opened on Jun 11 2024 by John Nduli
- Sort by Attributes
✓ issue opened on May 31 2024 by Frederick Muriuki Muriithi, last updated on May 31 2024 by Zachary Sloan
- Bug: Incorrect code for GN2 generic error handler
✓ issue opened on May 28 2024 by Alexander_Kabui, last updated on May 29 2024 by Alexander_Kabui
- issues/sorting-correlation-nan-vals.gmi
✓ issue opened on Nov 28 2022 by AlexanderKabui, last updated on May 29 2024 by Alexander_Kabui
- GNQA UI Enhancements
✓ issue opened on Feb 12 2024 by Alexander_Kabui, last updated on May 29 2024 by Alexander_Kabui; 1 of 1 tasks done
- GN3 Error Handling
document created on May 28 2024 by Alexander_Kabui
- Bug when using HTMX Ajax Post request
✓ issue opened on May 14 2024 by Alexander_Kabui, last updated on May 28 2024 by Alexander_Kabui
- Octopus Maintenance
document created on Feb 13 2023 by Pjotr Prins, last updated on May 24 2024 by Andrea Guarracino
- MGAMMA CLI
issue opened on Apr 17 2024 by Pjotr Prins, last updated on May 18 2024 by Artyom Bologov; 4 of 6 tasks done
- MGAMMA Convert
issue opened on Apr 17 2024 by Pjotr Prins, last updated on May 18 2024 by Artyom Bologov; 7 of 11 tasks done
- Can't Masquarade as another user as a system admin
issue opened on May 15 2024 by Munyoki Kilyungi
- Fire up system container for GN-QA System
document created on May 13 2024 by Munyoki Kilyungi, last updated on May 13 2024 by Munyoki Kilyungi
- StrainId wrong
issue opened on May 07 2024 by Pjotr Prins
- LMM precomputed scores
issue opened on Mar 16 2023 by Pjotr Prins, last updated on May 07 2024 by Pjotr Prins; 0 of 1 tasks done
- tux01 running out of RAM
✓ issue opened on Sep 03 2022 by Pjotr Prins, last updated on May 03 2024 by Pjotr Prins; 1 of 6 tasks done
- Edit OAuth2 Clients
✓ issue opened on Apr 24 2024 by Frederick Muriuki Muriithi, last updated on May 02 2024 by Frederick Muriuki Muriithi
- Data Upload Process
document created on Apr 30 2024 by Munyoki Kilyungi, last updated on Apr 30 2024 by Munyoki Kilyungi
- Re-use JWTs in gn3
✓ issue opened on Apr 30 2024 by Munyoki Kilyungi
- Move GN Dataset to Git
✓ issue opened on Feb 08 2024 by Munyoki Kilyungi, last updated on Apr 30 2024 by Munyoki Kilyungi; 4 of 4 tasks done
- Genotype database
document created on Jun 03 2022 by Arun Isaac, last updated on Apr 27 2024 by Pjotr Prins
- MGAMMA
issue opened on Apr 17 2024 by Pjotr Prins, last updated on Apr 27 2024 by Artyom Bologov
- Handle Invalid Login Errors Correctly
✓ issue opened on Apr 24 2024 by Frederick Muriuki Muriithi, last updated on Apr 26 2024 by Frederick Muriuki Muriithi
- Tasks
issue opened on Jun 27 2023 by GregFa, last updated on Apr 26 2024 by Pjotr Prins; 0 of 2 tasks done
- MariaDB: Move to InnoDB Engine
issue opened on Dec 28 2021 by Pjotr Prins, last updated on Apr 24 2024 by Pjotr Prins; 0 of 8 tasks done
- Adding Species
document created on Apr 24 2024 by Frederick Muriuki Muriithi, last updated on Apr 24 2024 by Frederick Muriuki Muriithi
- Adding Platforms
document created on Apr 04 2024 by Frederick Muriuki Muriithi, last updated on Apr 24 2024 by Frederick Muriuki Muriithi
- Generating Key-Pairs
document created on Apr 18 2024 by Frederick Muriuki Muriithi, last updated on Apr 22 2024 by Frederick Muriuki Muriithi
- Data Integrity for Table Identifiers
✓ issue opened on Apr 16 2024 by Frederick Muriuki Muriithi, last updated on Apr 17 2024 by Frederick Muriuki Muriithi
- Logging with Flask and Gunicorn
document created on Apr 15 2024 by Frederick Muriuki Muriithi
- Moving /gnu
document created on Apr 13 2024 by Pjotr Prins, last updated on Apr 13 2024 by Pjotr Prins
- Fallbacks
document created on Feb 18 2024 by Pjotr Prins, last updated on Apr 09 2024 by Pjotr Prins
- Fallback issues
issue opened on Mar 22 2024 by Pjotr Prins, last updated on Apr 05 2024 by Pjotr Prins; 3 of 6 tasks done
- Debugging and developing code
document created on Mar 19 2024 by Pjotr Prins, last updated on Apr 05 2024 by Pjotr Prins
- Fire up system container for GN
document created on Mar 02 2024 by Pjotr Prins, last updated on Apr 05 2024 by Pjotr Prins
- Unresponsive Virtuoso in CD
✓ issue opened on Apr 02 2024 by Munyoki Kilyungi
- Julia Deployment
document created on Apr 01 2024 by Pjotr Prins
- Invoking SQLite3: CLI
document created on Mar 30 2024 by Frederick Muriuki Muriithi
- Handling Tissue in Uploader
issue opened on Mar 28 2024 by Frederick Muriuki Muriithi, last updated on Mar 28 2024 by Frederick Muriuki Muriithi; 2 of 2 tasks done
- Guix system containers and how we use them
document created on Mar 31 2023 by Arun Isaac, last updated on Mar 25 2024 by Pjotr Prins
- Database: `ProbeSetSE` Schema Bug
issue opened on Mar 22 2024 by Frederick Muriuki Muriithi, last updated on Mar 22 2024 by Frederick Muriuki Muriithi
- guix build gn-uploader: error
✓ issue opened on Mar 13 2024 by Frederick Muriuki Muriithi, last updated on Mar 18 2024 by Frederick Muriuki Muriithi
- Deploying gn-auth
document created on Mar 04 2024 by Frederick Muriuki Muriithi, last updated on Mar 12 2024 by Frederick Muriuki Muriithi
- Spam Entries in Auth (Production)
issue opened on Mar 07 2024 by Munyoki Kilyungi
- Dump sample data to LMDB
issue opened on Dec 15 2022 by Munyoki Kilyungi, last updated on Mar 06 2024 by Munyoki Kilyungi; 0 of 5 tasks done
- UI Frontend for RDF
✓ issue opened on Oct 11 2023 by Munyoki Kilyungi, last updated on Mar 06 2024 by Munyoki Kilyungi
- Add Sample Size to RDF
issue opened on Dec 15 2022 by Munyoki Kilyungi, last updated on Mar 06 2024 by Munyoki Kilyungi
- AI UI Enhancements
issue opened on Mar 01 2024 by Pjotr Prins; 0 of 3 tasks done
- Remove externally loaded JS
✓ issue opened on Apr 18 2022 by BonfaceKilz, last updated on Feb 28 2024 by Alexander_Kabui; 3 of 3 tasks done
- Read Samples/Cases/Individuals From Database
✓ issue opened on Jan 20 2024 by Frederick Muriuki Muriithi, last updated on Feb 27 2024 by Frederick Muriuki Muriithi
- QC: Fix Integration Tests
✓ issue opened on Jan 09 2024 by Frederick Muriuki Muriithi, last updated on Feb 27 2024 by Frederick Muriuki Muriithi
- Fix Opaque Errors
✓ issue opened on Feb 12 2024 by Frederick Muriuki Muriithi, last updated on Feb 27 2024 by Frederick Muriuki Muriithi
- Upload Strains
✓ issue opened on Dec 06 2023 by Frederick Muriuki Muriithi, last updated on Feb 27 2024 by Frederick Muriuki Muriithi; 5 of 5 tasks done
- Rework Test: Remove redis as Test Dependency
✓ issue opened on Oct 27 2023 by Frederick Muriuki Muriithi, last updated on Feb 27 2024 by Frederick Muriuki Muriithi
- Temp traits don't seem to be handled by the authorization system
✓ issue opened on Jul 28 2023 by Zachary Sloan, last updated on Feb 27 2024 by Frederick Muriuki Muriithi
- Rework Resources
✓ issue opened on Sep 06 2023 by Frederick Muriuki Muriithi, last updated on Feb 27 2024 by Frederick Muriuki Muriithi; 2 of 3 tasks done
- Prevent Weak Passwords
issue opened on Feb 27 2024 by Frederick Muriuki Muriithi
- Handle "too-many-password-attempts"
issue opened on Feb 27 2024 by Frederick Muriuki Muriithi
- Provide Link to Register User on Sign-In Page
issue opened on Feb 27 2024 by Frederick Muriuki Muriithi, last updated on Feb 27 2024 by Frederick Muriuki Muriithi
- GeneNetwork Uploader Requirements
document created on Feb 22 2024 by Frederick Muriuki Muriithi, last updated on Feb 22 2024 by Frederick Muriuki Muriithi
- A Listing of Features and/or Bugs without Dedicated Issues
issue opened on Feb 16 2024 by Frederick Muriuki Muriithi; 1 of 1 tasks done
- Improve Logging in GN3 RDF endpoints
✓ issue opened on Feb 10 2024 by Munyoki Kilyungi, last updated on Feb 14 2024 by Munyoki Kilyungi
- Slurm User Guide on Octopus HPC
document created on Feb 11 2024 by Pjotr Prins, last updated on Feb 12 2024 by Pjotr Prins
- R
document created on Feb 10 2024 by Pjotr Prins, last updated on Feb 12 2024 by Pjotr Prins
- GN3 Setup on tux01 - Non-Deterministic Behavior
✓ issue opened on Jan 15 2024 by Munyoki Kilyungi, last updated on Feb 10 2024 by Munyoki Kilyungi
- Octopus HPC
document created on Feb 10 2024 by Pjotr Prins
- GN3 NGINX Timeout
✓ issue opened on Jan 15 2024 by Alexander_Kabui, last updated on Jan 25 2024 by Alexander_Kabui
- Fix Failing GN2 tests
✓ issue opened on Jan 12 2024 by Munyoki Kilyungi, last updated on Jan 15 2024 by Munyoki Kilyungi
- Large Language Models (LLMs) & Metadata
document created on Jun 23 2023 by Solomon Shelby, last updated on Jan 12 2024 by Solomon Shelby
- Troubleshoot response inconsistencies for GN-llm
issue opened on Jan 10 2024 by Alexander_Kabui
- Add HTML Page for Genotypes
✓ issue opened on Jan 09 2024 by Munyoki Kilyungi, last updated on Jan 10 2024 by Munyoki Kilyungi
- Add HTML Page for ProbeSet Page
✓ issue opened on Dec 14 2023 by Munyoki Kilyungi, last updated on Jan 09 2024 by Munyoki Kilyungi
- GN3 API Configurations on CD
✓ issue opened on Jan 08 2024 by Alexander_Kabui, last updated on Jan 08 2024 by Alexander_Kabui
- LMM Notes
document created on Aug 13 2021 by Pjotr Prins, last updated on Jan 08 2024 by Solomon Shelby
- Troubleshoot https://luna.genenetwork.org/ai/ asking questions
✓ issue opened on Jan 04 2024 by Munyoki Kilyungi, last updated on Jan 04 2024 by Munyoki Kilyungi
- issues/data_upload_gn/hurdles_updating_names_to_GN.gmi
issue opened on Dec 21 2023 by Lisso_, last updated on Jan 04 2024 by Lisso_
- My Software Development Journey so far,
document created on Dec 04 2023 by fetche-lab, last updated on Jan 04 2024 by Lisso_
- CI rethink
issue opened on Jun 23 2023 by Arun Isaac, last updated on Jan 03 2024 by Arun Isaac; 7 of 8 tasks done
- Add GeneList to Metadata
✓ issue opened on Dec 13 2023 by Munyoki Kilyungi, last updated on Dec 20 2023 by Munyoki Kilyungi
- Make xapian index rebuild conditional on database checksums
✓ issue opened on Jun 01 2023 by Arun Isaac, last updated on Dec 19 2023 by Arun Isaac; 3 of 3 tasks done
- Trait Page Errors on CD
✓ issue opened on Nov 22 2022 by Frederick Muriuki Muriithi, last updated on Dec 18 2023 by Frederick Muriuki Muriithi
- Make Existing Data Public View by Default
✓ issue opened on May 24 2023 by Frederick Muriuki Muriithi, last updated on Dec 18 2023 by Frederick Muriuki Muriithi
- Import Collections Pop-up Bug
✓ issue opened on Dec 12 2023 by Zachary Sloan, last updated on Dec 18 2023 by Frederick Muriuki Muriithi
- Collections Count Bug
✓ issue opened on Dec 18 2023 by Frederick Muriuki Muriithi, last updated on Dec 18 2023 by Frederick Muriuki Muriithi
- Handling Resource Links in ProbeSet Page
✓ issue opened on Nov 22 2023 by Munyoki Kilyungi, last updated on Dec 14 2023 by Munyoki Kilyungi
- Add/Share Datasets HTMX Page
✓ issue opened on Dec 04 2023 by Munyoki Kilyungi, last updated on Dec 08 2023 by Munyoki Kilyungi
- Clean up Authorisation
✓ issue opened on Nov 19 2021 by BonfaceKilz, last updated on Dec 04 2023 by Frederick Muriuki Muriithi; 4 of 4 tasks done
- Put user info in the a/c name in the menu
document created on Mar 14 2022 by Frederick Muriuki Muriithi, last updated on Dec 04 2023 by Frederick Muriuki Muriithi
- Replace Hard coded authentication with gn-proxy
document created on Mar 14 2022 by Frederick Muriuki Muriithi, last updated on Dec 04 2023 by Frederick Muriuki Muriithi
- Authentication/authorisation design
document created on Oct 17 2022 by Pjotr Prins, last updated on Dec 04 2023 by Frederick Muriuki Muriithi
- Automated Testing
document created on Oct 12 2022 by Munyoki Kilyungi, last updated on Dec 03 2023 by Pjotr Prins
- Add Metadata To The Trait Page (RDF)
document created on Sep 28 2022 by Munyoki Kilyungi, last updated on Dec 03 2023 by Pjotr Prins
- Utility Scripts
document created on Jun 05 2023 by Frederick Muriuki Muriithi, last updated on Dec 03 2023 by Pjotr Prins
- Use exceptions to indicate errors
document created on Aug 25 2022 by Arun Isaac, last updated on Dec 03 2023 by Pjotr Prins
- Maybe monad
document created on Sep 25 2022 by Munyoki Kilyungi, last updated on Dec 03 2023 by Pjotr Prins
- Coding guidelines
document created on Aug 25 2022 by Arun Isaac, last updated on Dec 03 2023 by Pjotr Prins
- Coding Anti-Patterns
document created on Sep 29 2022 by Munyoki Kilyungi, last updated on Dec 03 2023 by Pjotr Prins
- Improving Logging in GN2
document created on Aug 23 2022 by Munyoki Kilyungi, last updated on Dec 03 2023 by Pjotr Prins
- Building a ~guix pack~ for Environment Sharing
document created on Sep 13 2022 by Frederick Muriuki Muriithi, last updated on Dec 03 2023 by Pjotr Prins
- How to Submit a Temp trait (for testing purposes or otherwise)
document created on Aug 02 2023 by Zachary Sloan, last updated on Dec 03 2023 by Pjotr Prins
- How to Start GN2 and GN3
document created on Dec 08 2022 by Zachary Sloan, last updated on Dec 03 2023 by Pjotr Prins
- Starting GN1
document created on Dec 08 2022 by Pjotr Prins, last updated on Dec 03 2023 by Pjotr Prins
- Phenotype Naming Conventions
document created on Nov 23 2022 by Munyoki Kilyungi, last updated on Dec 03 2023 by Pjotr Prins
- Developing against GeneNetwork
document created on Jun 18 2023 by Pjotr Prins, last updated on Dec 03 2023 by Pjotr Prins
- Useful Shell Scripts
document created on Oct 06 2022 by Munyoki Kilyungi, last updated on Dec 03 2023 by Pjotr Prins
- Our virtuoso instances
document created on Mar 31 2023 by Arun Isaac, last updated on Dec 03 2023 by Pjotr Prins
- CI Rethink slides
document created on Jul 13 2023 by Arun Isaac, last updated on Dec 03 2023 by Pjotr Prins
- Continuous Deployment logs
document created on Feb 15 2023 by Arun Isaac, last updated on Dec 03 2023 by Pjotr Prins
- Using pudb
document created on Dec 21 2021 by jgart, last updated on Dec 03 2023 by Pjotr Prins
- Using PDB to Troubleshoot Python Code
document created on Dec 03 2023 by Pjotr Prins
- Running pudb From an External Environment
document created on Dec 03 2023 by Pjotr Prins
- Using pudb with pytest
document created on Dec 21 2021 by jgart, last updated on Dec 03 2023 by Pjotr Prins
- Profiling Python code
document created on Dec 03 2023 by Pjotr Prins
- Adding Quantitative Tracks Using BigWig Files
document created on Nov 14 2023 by cel7t, last updated on Dec 03 2023 by Pjotr Prins
- Queries and Prepared Statements in Python
document created on Sep 27 2022 by Frederick Muriuki Muriithi, last updated on Dec 03 2023 by Pjotr Prins
- Xapian search
document created on May 02 2023 by Arun Isaac, last updated on Dec 03 2023 by Pjotr Prins
- Xapian search queries
document created on Feb 13 2023 by Arun Isaac, last updated on Dec 03 2023 by Pjotr Prins
- Xapian scalability
document created on Oct 10 2022 by Arun Isaac, last updated on Dec 03 2023 by Pjotr Prins
- topics/xapian/xapian-indexing-on-tux01.gmi
document created on Jul 27 2023 by Zachary Sloan, last updated on Dec 03 2023 by Pjotr Prins
- Shepherd
document created on Aug 27 2021 by Pjotr Prins, last updated on Dec 02 2023 by Pjotr Prins
- Minor Phenotype Page UI updates
✓ issue opened on Nov 30 2023 by Munyoki Kilyungi, last updated on Dec 01 2023 by Munyoki Kilyungi; 6 of 6 tasks done
- Genotype correlations only returning results from first chromosome
✓ issue opened on Oct 21 2022 by Zachary Sloan, last updated on Nov 29 2023 by Zachary Sloan
- Buggy Use of `urllib.parse.urljoin`
✓ issue opened on Jul 25 2022 by Frederick Muriuki Muriithi, last updated on Nov 28 2023 by Frederick Muriuki Muriithi
- Big File Upload Fails
✓ issue opened on Jan 17 2023 by Frederick Muriuki Muriithi, last updated on Nov 28 2023 by Frederick Muriuki Muriithi
- Add to Collection Error
✓ issue opened on Oct 09 2023 by Frederick Muriuki Muriithi, last updated on Nov 28 2023 by Frederick Muriuki Muriithi
- Rewrite qc and qc-uploads in Python3
✓ issue opened on Apr 11 2022 by Frederick Muriuki Muriithi, last updated on Nov 28 2023 by Frederick Muriuki Muriithi
- Conflating `dataset_id` with `inbred_set_id`
✓ issue opened on Jul 18 2023 by Frederick Muriuki Muriithi, last updated on Nov 28 2023 by Frederick Muriuki Muriithi
- Remove bcrypt as a Dependency
✓ issue opened on Oct 27 2023 by Frederick Muriuki Muriithi, last updated on Nov 28 2023 by Frederick Muriuki Muriithi
- Phenotype Correlation Error
✓ issue opened on Sep 28 2022 by Zachary Sloan, last updated on Nov 28 2023 by Frederick Muriuki Muriithi
- Export Uploaded Data to LMDB and RDF Stores
issue opened on Nov 03 2023 by Frederick Muriuki Muriithi, last updated on Nov 14 2023 by Frederick Muriuki Muriithi; 0 of 6 tasks done
- Move Data Endpoints from GN2 to GN3
✓ issue opened on Nov 03 2023 by Frederick Muriuki Muriithi, last updated on Nov 03 2023 by Frederick Muriuki Muriithi
- Gn Markdown Editor implementation
issue opened on Nov 03 2023 by Alexander_Kabui; 4 of 5 tasks done
- Octopus sysmaintenance
issue opened on Oct 12 2021 by Pjotr Prins, last updated on Oct 31 2023 by Pjotr Prins; 0 of 8 tasks done
- Bug with linking data
issue opened on Jul 26 2023 by Zachary Sloan, last updated on Oct 19 2023 by Frederick Muriuki Muriithi
- GeneNetwork/AI workshop
document created on Oct 08 2023 by Pjotr Prins, last updated on Oct 12 2023 by Pjotr Prins
- Fix Failing MR Failing Tests
✓ issue opened on Sep 13 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Fix possible python 3.10 linting errors after bump from 3.9
✓ issue opened on Jun 06 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Migrate to Python3.10
✓ issue opened on Jul 12 2023 by Frederick Muriuki Muriithi, last updated on Oct 11 2023 by Munyoki Kilyungi; 0 of 1 tasks done
- Rework Fetching Settings
✓ issue opened on Sep 25 2022 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Model Menu In RDF
✓ issue opened on Apr 18 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Integrate Feed Analyser
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Incorrect PubMed IDs in the Publication Table
✓ issue opened on May 09 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Improve sparql results
✓ issue opened on Jul 07 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Autogenerate documentation: trees, and labels
✓ issue opened on Jun 23 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Try out Auth Code Locally
✓ issue opened on Apr 21 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi; 2 of 2 tasks done
- Order entries in CSV dump
✓ issue opened on Mar 20 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Modelling Phenotype Data
✓ issue opened on Aug 08 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Genotype Metadata
✓ issue opened on Nov 29 2022 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Need Guix packages
✓ issue opened on Mar 12 2022 by Pjotr Prins, last updated on Oct 11 2023 by Munyoki Kilyungi
- Create a new UI language for gn2
✓ issue opened on Apr 18 2022 by BonfaceKilz, last updated on Oct 11 2023 by Munyoki Kilyungi
- Broken Indexing
✓ issue opened on May 03 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Ontologies
document created on Jul 31 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Decommission machines
issue opened on Oct 06 2021 by Pjotr Prins, last updated on Sep 22 2023 by Pjotr Prins; 11 of 22 tasks done
- Gn Markdown Editor implementation
issue opened on Aug 07 2023 by Alexander_Kabui, last updated on Sep 11 2023 by Alexander_Kabui; 4 of 5 tasks done
- Understanding GN's Classification Scheme
document created on Aug 29 2023 by Munyoki Kilyungi, last updated on Aug 31 2023 by Munyoki Kilyungi
- Invalid Token Error
✓ issue opened on Aug 25 2023 by Zachary Sloan, last updated on Aug 31 2023 by Frederick Muriuki Muriithi
- Fix Broken UTF-8 characters in our Database
✓ issue opened on Nov 29 2022 by Munyoki Kilyungi, last updated on Aug 29 2023 by Munyoki Kilyungi
- GNSoC 2023
document created on Jun 21 2023 by Pjotr Prins, last updated on Aug 24 2023 by Pjotr Prins
- This document has some useful SQL tricks
document created on Aug 08 2023 by Munyoki Kilyungi, last updated on Aug 11 2023 by Munyoki Kilyungi
- Improving Metadata Audit
document created on Jul 25 2023 by Frederick Muriuki Muriithi, last updated on Aug 11 2023 by Frederick Muriuki Muriithi
- Temporary Traits Access Concerns
issue opened on Aug 03 2023 by Frederick Muriuki Muriithi
- Brittle Fix for Editing Metadata
issue opened on Aug 02 2023 by Frederick Muriuki Muriithi
- Snellius
document created on Mar 20 2023 by Pjotr Prins, last updated on Aug 01 2023 by Pjotr Prins
- Paginate Resources Page
issue opened on Jul 27 2023 by Frederick Muriuki Muriithi
- UI issues/improvements
issue opened on Jul 26 2023 by Zachary Sloan
- Reasons There is HTML and CSS in GN3
document created on Jul 26 2023 by Frederick Muriuki Muriithi
- Search is case sensitive
issue opened on Jul 26 2023 by Arun Isaac
- rewrite sampledata fetching with genofiles using scheme
issue opened on Jul 19 2023 by Alexander_Kabui, last updated on Jul 26 2023 by Alexander_Kabui; 2 of 6 tasks done
- Guixify LLM container
✓ issue opened on Jul 20 2023 by Munyoki Kilyungi, last updated on Jul 25 2023 by Munyoki Kilyungi
- Delete Rejected Diffs from Database
✓ issue opened on Jul 25 2023 by Frederick Muriuki Muriithi, last updated on Jul 25 2023 by Frederick Muriuki Muriithi
- Editing Trait Metadata and Sample Data
document created on Jul 07 2023 by Frederick Muriuki Muriithi, last updated on Jul 25 2023 by Frederick Muriuki Muriithi
- Editing Data
document created on Nov 23 2021 by BonfaceKilz, last updated on Jul 25 2023 by Frederick Muriuki Muriithi
- Show "Edit" Button for All Users
✓ issue opened on Jul 24 2023 by Frederick Muriuki Muriithi, last updated on Jul 24 2023 by Frederick Muriuki Muriithi
- Show Last Edited
issue opened on Jul 24 2023 by Frederick Muriuki Muriithi
- Queries for fetching/editing metadata
document created on Jul 22 2023 by Munyoki Kilyungi
- Fetch trait data using genofiles
issue opened on Jul 11 2023 by Alexander_Kabui, last updated on Jul 13 2023 by Alexander_Kabui; 2 of 3 tasks done
- Sample Data not Appearing in Phenotype-Editing Page
✓ issue opened on Jul 12 2023 by Frederick Muriuki Muriithi, last updated on Jul 12 2023 by Frederick Muriuki Muriithi
- Editing Phenotypes
document created on Jul 07 2023 by Frederick Muriuki Muriithi, last updated on Jul 12 2023 by Frederick Muriuki Muriithi
- Implementing parallel correlation with rust
✓ issue opened on Apr 25 2022 by Alexander Kabui, last updated on Jul 11 2023 by Alexander_Kabui; 12 of 15 tasks done
- Parsing genotyfiles
issue opened on Jul 11 2023 by Alexander_Kabui
- Linking genotype files to datasets
issue opened on Jul 07 2023 by Alexander_Kabui, last updated on Jul 11 2023 by Alexander_Kabui
- Info-Files Editing
document created on Jul 07 2023 by Frederick Muriuki Muriithi
- Sparql Examples
document created on Apr 04 2023 by Munyoki Kilyungi, last updated on Jul 07 2023 by Pjotr Prins
- Scheme Macros
document created on Jul 05 2023 by Munyoki Kilyungi
- Letsencrypt
issue opened on Oct 13 2021 by Pjotr Prins, last updated on Jul 04 2023 by Pjotr Prins; 2 of 5 tasks done
- Modifying dump macros
document created on Jul 01 2023 by Munyoki Kilyungi
- LMDB Phenotype/Genotype Store
document created on Jun 22 2023 by Munyoki Kilyungi, last updated on Jun 30 2023 by Alexander_Kabui
- Genenetwork2 Configurations
issue opened on Jun 15 2023 by Frederick Muriuki Muriithi, last updated on Jun 28 2023 by Frederick Muriuki Muriithi
- Genenetwork2 Configurations
issue opened on Jun 14 2023 by Frederick Muriuki Muriithi, last updated on Jun 28 2023 by Frederick Muriuki Muriithi
- issues/fix-genotype-filename-HSNIH-Palmer.gmi
issue opened on Jun 27 2023 by GregFa
- issues/add-pluto-notebooks.gmi
issue opened on Jun 27 2023 by GregFa
- Upload probeset metadata
✓ issue opened on Jun 19 2023 by Munyoki Kilyungi, last updated on Jun 26 2023 by Munyoki Kilyungi
- Create Traits Endpoints in RDF
✓ issue opened on May 18 2023 by Munyoki Kilyungi, last updated on Jun 19 2023 by Munyoki Kilyungi; 3 of 3 tasks done
- Branding and front-end-services
issue opened on Jun 14 2023 by Pjotr Prins; 0 of 1 tasks done
- Genenetwork3 Effective UID
✓ issue opened on Jun 05 2023 by Frederick Muriuki Muriithi, last updated on Jun 09 2023 by Frederick Muriuki Muriithi
- OAuth2
document created on May 29 2023 by Frederick Muriuki Muriithi, last updated on Jun 07 2023 by Frederick Muriuki Muriithi
- NGINX Configuration Notes
document created on Jun 01 2023 by Zachary Sloan
- CLI Utility Scripts
document created on May 29 2023 by Frederick Muriuki Muriithi, last updated on May 30 2023 by Frederick Muriuki Muriithi
- Build Registration Page for OAuth2 Clients
✓ issue opened on Dec 22 2022 by Frederick Muriuki Muriithi, last updated on May 30 2023 by Frederick Muriuki Muriithi
- Slow query
issue opened on May 27 2023 by Pjotr Prins, last updated on May 29 2023 by Pjotr Prins; 0 of 2 tasks done
- OpenSMTPD
document created on May 27 2023 by Pjotr Prins
- Enable User Masquerade
✓ issue opened on May 22 2023 by Frederick Muriuki Muriithi, last updated on May 23 2023 by Frederick Muriuki Muriithi
- Use "Authorisation Code Flow" for Authentication
✓ issue opened on May 08 2023 by Frederick Muriuki Muriithi, last updated on May 22 2023 by Frederick Muriuki Muriithi
- Migrate User Collections
✓ issue opened on May 08 2023 by Frederick Muriuki Muriithi, last updated on May 22 2023 by Frederick Muriuki Muriithi
- Migrate User Accounts from Redis to new Auth DB
✓ issue opened on Dec 22 2022 by Frederick Muriuki Muriithi, last updated on May 22 2023 by Frederick Muriuki Muriithi
- Amazon Web Services
document created on May 15 2023 by AndreaGuarracino, last updated on May 18 2023 by Munyoki Kilyungi
- Give Examples of Fetching GeneRIF Metadata in Sparql
✓ issue opened on Apr 04 2023 by Munyoki Kilyungi, last updated on May 18 2023 by Munyoki Kilyungi
- Document xapian search code architecture
✓ issue opened on Mar 20 2023 by Arun Isaac, last updated on May 05 2023 by Arun Isaac
- Troubleshoot CD Menu Failure
✓ issue opened on Apr 21 2023 by Munyoki Kilyungi, last updated on Apr 26 2023 by Munyoki Kilyungi
- Upload GeneWiki RDF metadata to CD
✓ issue opened on Apr 17 2023 by Munyoki Kilyungi, last updated on Apr 18 2023 by Munyoki Kilyungi
- Add GeneRIF page
✓ issue opened on Apr 14 2023 by Munyoki Kilyungi, last updated on Apr 18 2023 by Munyoki Kilyungi
- Add mouse data-set
issue opened on Jun 30 2022 by BonfaceKilz, last updated on Apr 18 2023 by Munyoki Kilyungi; 0 of 4 tasks done
- Unable to open new tab for mapping/ correlations with Chrome
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Apr 18 2023 by Munyoki Kilyungi
- Document redis data
✓ issue opened on Nov 27 2021 by BonfaceKilz, last updated on Apr 18 2023 by Munyoki Kilyungi
- Proxy has hard coded URLs
✓ issue opened on Oct 22 2021 by Pjotr Prins, last updated on Apr 18 2023 by Munyoki Kilyungi
- Error when fetching SNPs in a search page
✓ issue opened on Sep 28 2022 by Munyoki Kilyungi, last updated on Apr 18 2023 by Munyoki Kilyungi
- Fix Case Attribute Work (Consecutive CRUD applications)
✓ issue opened on Apr 06 2022 by BonfaceKilz, last updated on Apr 18 2023 by Munyoki Kilyungi; 0 of 2 tasks done
- Uninformative error when batch submitting unknown strains
✓ issue opened on May 05 2022 by BonfaceKilz, last updated on Apr 18 2023 by Munyoki Kilyungi
- Editing traits for BXDs is failing for "%" substitution
✓ issue opened on Nov 09 2022 by Munyoki Kilyungi, last updated on Apr 18 2023 by Munyoki Kilyungi
- Editing Metadata [Improvements to Make]
✓ issue opened on Mar 31 2022 by BonfaceKilz, last updated on Apr 18 2023 by Munyoki Kilyungi; 7 of 11 tasks done
- Editing Case Attribute
✓ issue opened on Mar 16 2023 by Munyoki Kilyungi, last updated on Apr 18 2023 by Munyoki Kilyungi
- Cannot Edit Metadata of BXD Traits Effectively
✓ issue opened on Apr 28 2022 by BonfaceKilz, last updated on Apr 18 2023 by Munyoki Kilyungi; 10 of 12 tasks done
- Dump GeneWiki data
✓ issue opened on Mar 30 2023 by Munyoki Kilyungi, last updated on Apr 17 2023 by Munyoki Kilyungi
- Coupling current_app and db_utils
✓ issue opened on Apr 04 2023 by Frederick Muriuki Muriithi, last updated on Apr 15 2023 by Frederick Muriuki Muriithi
- Add Cis-Trans plot
issue opened on Apr 07 2023 by Pjotr Prins
- Fix load-rdf.scm script
✓ issue opened on Apr 05 2023 by Munyoki Kilyungi, last updated on Apr 05 2023 by Munyoki Kilyungi
- GeneNetwork SQL Database to RDF
document created on Mar 24 2023 by Pjotr Prins, last updated on Apr 04 2023 by Arun Isaac
- Dump GeneWiki Metadata
✓ issue opened on Mar 16 2023 by Munyoki Kilyungi, last updated on Apr 04 2023 by Munyoki Kilyungi
- Search results presentation
issue opened on Apr 04 2023 by Alexander_Kabui
- Report invalid search queries passed to the search API
issue opened on Feb 15 2023 by Arun Isaac, last updated on Apr 04 2023 by Alexander_Kabui
- Improve presentation of search results
✓ issue opened on Feb 13 2023 by Arun Isaac, last updated on Apr 04 2023 by Alexander_Kabui
- Add search syntax hints to web UI
✓ issue opened on Feb 15 2023 by Arun Isaac, last updated on Apr 04 2023 by Alexander_Kabui
- Enter key in global search field
✓ issue opened on Feb 13 2023 by Arun Isaac, last updated on Apr 04 2023 by Alexander_Kabui
- Document all virtuoso instances
✓ issue opened on Mar 20 2023 by Arun Isaac, last updated on Mar 31 2023 by Arun Isaac
- Use genodb in genenetwork
issue opened on Jul 19 2022 by Arun Isaac, last updated on Mar 31 2023 by Arun Isaac
- Xapian Search Results not Quite as Expected
✓ issue opened on Mar 25 2023 by Frederick Muriuki Muriithi, last updated on Mar 31 2023 by Arun Isaac
- Search queries with quoted author names don't work
issue opened on Mar 28 2023 by Arun Isaac
- Case Attribute Editing Problems
✓ issue opened on May 02 2022 by Zachary Sloan, last updated on Mar 20 2023 by Munyoki Kilyungi
- Databases Getting Out of Wack
issue opened on Mar 03 2022 by jgart, last updated on Mar 16 2023 by Pjotr Prins
- ProbeData
issue opened on Dec 30 2021 by Pjotr Prins, last updated on Mar 14 2023 by Arun Isaac
- Annotation
issue opened on Sep 14 2022 by Pjotr Prins, last updated on Mar 14 2023 by Arun Isaac; 0 of 5 tasks done
- issues/search-hyphen-issue.gmi
issue opened on Feb 24 2022 by Zachary Sloan, last updated on Mar 14 2023 by Arun Isaac
- sample data caching bug
issue opened on Feb 11 2022 by Zachary Sloan, last updated on Mar 14 2023 by Arun Isaac
- issues/adding-traits-from-mapping.gmi
issue opened on Feb 24 2022 by Zachary Sloan, last updated on Mar 14 2023 by Arun Isaac
- issues/add-collection-import.gmi
✓ issue opened on Apr 29 2022 by Zachary Sloan, last updated on Mar 14 2023 by Arun Isaac
- Global search doesn't seem to return phenotype traits
✓ issue opened on Nov 11 2022 by Zachary Sloan, last updated on Mar 14 2023 by Zachary Sloan
- ProbeSetData
issue opened on Dec 31 2021 by Pjotr Prins, last updated on Mar 13 2023 by Pjotr Prins; 15 of 17 tasks done
- slow text search query
issue opened on Mar 12 2023 by Pjotr Prins
- Hanging database
issue opened on Dec 21 2021 by Pjotr Prins, last updated on Mar 11 2023 by Pjotr Prins
- issues/custom_data_for_scatterplot.gmi
issue opened on Mar 09 2023 by Zachary Sloan
- Some correlations running very slowly
issue opened on Mar 06 2023 by Zachary Sloan, last updated on Mar 07 2023 by Pjotr Prins
- Lisp links
document created on Feb 28 2023 by Pjotr Prins
- BigBlueButton
document created on Mar 05 2022 by jgart, last updated on Feb 28 2023 by Pjotr Prins
- Support searching using SNP names
issue opened on Feb 15 2023 by Arun Isaac
- Default search query in search field
issue opened on Feb 13 2023 by Arun Isaac
- Full text search
✓ issue opened on Jun 30 2022 by Arun Isaac, last updated on Feb 13 2023 by Arun Isaac; 1 of 1 tasks done
- Bug when a user quickly clicks "Compute" for mapping on the trait page
issue opened on Feb 06 2023 by Zachary Sloan, last updated on Feb 13 2023 by Zachary Sloan
- AI Community Symposium at iHub
document created on Jan 26 2023 by Brian Muhia, last updated on Jan 30 2023 by Pjotr Prins
- Pkgconfig
document created on Jan 25 2023 by Pjotr Prins
- CLI Script to Generate Text Files
issue opened on Dec 19 2022 by Frederick Muriuki Muriithi, last updated on Jan 23 2023 by Alexander_Kabui
- Add option to directly link to mapping results
issue opened on Jan 19 2023 by Zachary Sloan
- Running postgres in a Guix container
document created on Jan 17 2023 by Pjotr Prins
- List of proposed changes for PCA traits/figures in Correlation Matrix page
issue opened on Jan 09 2023 by Zachary Sloan
- R/qtl JSONDecodeError
✓ issue opened on Dec 23 2022 by Pjotr Prins, last updated on Dec 24 2022 by Pjotr Prins; 3 of 3 tasks done
- Guix packages
document created on Dec 23 2022 by Pjotr Prins
- metadata caching bug
✓ issue opened on Mar 18 2022 by Alexander Kabui, last updated on Dec 23 2022 by Pjotr Prins; 2 of 2 tasks done
- Using curl
document created on Dec 23 2022 by Pjotr Prins
- GN1 annotation page broken
issue opened on Dec 23 2022 by Pjotr Prins
- GN Services
document created on Sep 15 2021 by Pjotr Prins, last updated on Dec 23 2022 by Pjotr Prins
- Correlation results wrong for certain traits/datasets
issue opened on Dec 12 2022 by Zachary Sloan, last updated on Dec 22 2022 by Zachary Sloan
- Do not conflict with 'random' module
✓ issue opened on Dec 20 2022 by Arun Isaac, last updated on Dec 21 2022 by Frederick Muriuki Muriithi
- Materialised Views for Correlations
✓ issue opened on Oct 19 2022 by Frederick Muriuki Muriithi, last updated on Dec 19 2022 by Frederick Muriuki Muriithi
- GN1 Pairscan
✓ issue opened on Sep 15 2021 by Pjotr Prins, last updated on Dec 17 2022 by Pjotr Prins
- Marker mapping
✓ issue opened on Sep 15 2021 by Pjotr Prins, last updated on Dec 17 2022 by Pjotr Prins
- GN1 github problem
issue opened on Dec 17 2022 by Pjotr Prins
- GN1 annotation page broken
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Dec 17 2022 by Pjotr Prins; 0 of 2 tasks done
- Annotate traits page with metadata from RDF
✓ issue opened on Sep 30 2022 by Munyoki Kilyungi, last updated on Dec 15 2022 by Munyoki Kilyungi; 16 of 16 tasks done
- Tux02 Production
issue opened on Oct 07 2021 by Pjotr Prins, last updated on Dec 14 2022 by Pjotr Prins; 17 of 22 tasks done
- Add LICENSE page to GN2
issue opened on Dec 12 2022 by Pjotr Prins
- GN1 metadata
issue opened on Dec 09 2022 by Pjotr Prins; 0 of 3 tasks done
- Update production
document created on Dec 07 2022 by Pjotr Prins, last updated on Dec 09 2022 by Pjotr Prins
- Correlations: Returning Fewer Results
issue opened on Nov 07 2022 by AlexanderKabui, last updated on Nov 25 2022 by Zachary Sloan
- Decouple Tasks in Correlations Results Display
issue opened on Oct 24 2022 by Frederick Muriuki Muriithi, last updated on Nov 25 2022 by Frederick Muriuki Muriithi
- Fix some display issue with the Correlation Results table (plus add column resizing)
✓ issue opened on May 11 2022 by Zachary Sloan, last updated on Nov 22 2022 by Zachary Sloan
- Correlations: Fewer Results than Expected
issue opened on Nov 22 2022 by Frederick Muriuki Muriithi
- Correlations are not including f1 parents
issue opened on Nov 07 2022 by AlexanderKabui, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Correlations timing out for "UMUTAffy Hippocampus Exon (Feb09) RMA" correlations (and probably some others)
issue opened on Oct 17 2022 by Zachary Sloan, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Remove Extra Partial Correlations Options
✓ issue opened on May 16 2022 by Frederick Muriuki Muriithi, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Correlations time out
✓ issue opened on Aug 06 2021 by Pjotr Prins, last updated on Nov 22 2022 by Frederick Muriuki Muriithi; 2 of 3 tasks done
- Correlations are wrongly always using all samples
✓ issue opened on Oct 21 2022 by Zachary Sloan, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Correlations fail for at least some ProbeSet datasets (as the target dataset)
✓ issue opened on Oct 17 2022 by Zachary Sloan, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Dataset Queried Twice
✓ issue opened on Oct 20 2022 by Frederick Muriuki Muriithi, last updated on Nov 21 2022 by AlexanderKabui
- Data Uploads: Zero Representation
✓ issue opened on Feb 08 2022 by BonfaceKilz, last updated on Nov 11 2022 by Munyoki Kilyungi
- Notify a user after a minor change
✓ issue opened on Nov 09 2022 by Munyoki Kilyungi, last updated on Nov 11 2022 by Munyoki Kilyungi
- Long samplenames overflow in Haplotype Analyst
issue opened on Nov 11 2022 by Zachary Sloan
- User Registration
document created on Nov 02 2022 by Frederick Muriuki Muriithi
- Password Reset
document created on Nov 02 2022 by Frederick Muriuki Muriithi
- Run Correlations in External Process
✓ issue opened on Oct 19 2022 by Frederick Muriuki Muriithi, last updated on Oct 31 2022 by Frederick Muriuki Muriithi
- Errors, defects and missing data in the database
issue opened on Oct 27 2022 by Arun Isaac, last updated on Oct 30 2022 by Arun Isaac
- Orchestration and fallbacks
document created on Sep 02 2022 by Pjotr Prins, last updated on Oct 25 2022 by Pjotr Prins
- Pre-Cache Datasets
issue opened on Oct 24 2022 by Frederick Muriuki Muriithi
- Do Bulk Query for Correlation Results' Display
✓ issue opened on Oct 21 2022 by Frederick Muriuki Muriithi, last updated on Oct 24 2022 by Frederick Muriuki Muriithi
- Replace IPFS
document created on Oct 06 2022 by Pjotr Prins, last updated on Oct 23 2022 by Pjotr Prins
- Debug RISC-V assembly with QEMU and GDB
document created on Oct 19 2022 by Arun Isaac
- Database Migrations
issue opened on Oct 19 2022 by Frederick Muriuki Muriithi
- Developer links for
document created on May 06 2022 by Arun Isaac, last updated on Oct 16 2022 by Pjotr Prins
- Interesting links for coders
document created on Oct 16 2022 by Pjotr Prins
- Global search does not close connections properly (and is slow)
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 14 2022 by Arun Isaac
- Global search problems
✓ issue opened on Aug 26 2022 by Pjotr Prins, last updated on Oct 14 2022 by Arun Isaac; 1 of 2 tasks done
- Automatically find broken links on GN2
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi; 2 of 2 tasks done
- Search results for SNP looks weird
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi
- Capture Data on the BXDs in RDF
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi
- Better Logging
✓ issue opened on Aug 23 2022 by Munyoki Kilyungi, last updated on Oct 12 2022 by Munyoki Kilyungi
- Handle Configuration Files
issue opened on Dec 03 2021 by BonfaceKilz, last updated on Oct 12 2022 by Munyoki Kilyungi
- Fix Case Attribute Work (Same Columns)
✓ issue opened on Apr 06 2022 by BonfaceKilz, last updated on Oct 12 2022 by Munyoki Kilyungi; 9 of 9 tasks done
- Automated Testing
✓ issue opened on Feb 10 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi; 0 of 10 tasks done
- Using guix-bioinformatics in a channels.scm file
issue opened on Aug 15 2021 by Efraim Flashner, last updated on Oct 09 2022 by Pjotr Prins
- Terminal output to the browser
issue opened on Oct 28 2021 by jgart, last updated on Oct 07 2022 by Arun Isaac
- Rebooting the GN production machine(s)
issue opened on Jan 01 2022 by Pjotr Prins, last updated on Oct 06 2022 by Pjotr Prins; 4 of 4 tasks done
- 'TempDataSet' object has no attribute 'query_for_group' (error)
✓ issue opened on Mar 22 2022 by Frederick Muriuki Muriithi, last updated on Sep 28 2022 by Alexander_Kabui
- Mapping: Haley-Knott Regression: Zooming Bug
✓ issue opened on Sep 22 2022 by Zachary Sloan, last updated on Sep 28 2022 by Alexander_Kabui
- Failing Tests
✓ issue opened on Aug 03 2022 by Frederick Muriuki Muriithi, last updated on Sep 20 2022 by Alexander_Kabui
- Fix Missing Genotype Files for GEMMA
issue opened on Sep 13 2022 by Frederick Muriuki Muriithi, last updated on Sep 20 2022 by Frederick Muriuki Muriithi; 1 of 3 tasks done
- GEMMA should report name of missing genotype file
✓ issue opened on Aug 20 2022 by Arun Isaac, last updated on Sep 19 2022 by Arun Isaac
- Missing Python Module(s) for GeneNetwork3
issue opened on Sep 19 2022 by Frederick Muriuki Muriithi
- Add track for showing which regions in mouse/rat correspond to human regions to the mapping figure
issue opened on Jul 21 2022 by Zachary Sloan, last updated on Sep 14 2022 by Pjotr Prins
- Simplify `dataset.py` in GeneNetwork2
issue opened on Sep 13 2022 by Frederick Muriuki Muriithi
- Markdown docs
issue opened on Sep 10 2022 by Pjotr Prins
- Replace sqlalchemy with MySQLdb
✓ issue opened on Aug 29 2022 by Munyoki Kilyungi, last updated on Sep 08 2022 by Munyoki Kilyungi
- Tests for the genodb genotype database
✓ issue opened on Aug 30 2022 by Arun Isaac, last updated on Sep 05 2022 by Alexander_Kabui
- Second production on tux02
issue opened on Aug 23 2022 by Arun Isaac, last updated on Sep 05 2022 by Alexander_Kabui
- GN2 Time Machines
issue opened on Aug 19 2022 by Pjotr Prins, last updated on Sep 05 2022 by Alexander_Kabui; 4 of 10 tasks done
- MySQLdb._exceptions.OperationalError: (1040, 'Too many connections')
✓ issue opened on Aug 29 2022 by Munyoki Kilyungi, last updated on Sep 05 2022 by Alexander_Kabui; 2 of 2 tasks done
- Genewiki conversion
issue opened on Aug 26 2022 by Pjotr Prins, last updated on Sep 05 2022 by Alexander_Kabui; 0 of 3 tasks done
- topics/systems/migrate-p2.gmi
document created on Sep 02 2022 by Pjotr Prins, last updated on Sep 05 2022 by Alexander_Kabui
- Timeout in CD
✓ issue opened on Jul 22 2022 by Arun Isaac, last updated on Aug 17 2022 by Arun Isaac
- Miscellaneous UI issues
✓ issue opened on Apr 08 2022 by Zachary Sloan, last updated on Aug 08 2022 by Munyoki Kilyungi
- Enable all DataTables to call the same code
issue opened on Jul 26 2022 by Zachary Sloan, last updated on Jul 27 2022 by Zachary Sloan
- Allow analyses to be done between traits from "individuals" groups and their corresponding "main" group
issue opened on Jul 21 2022 by Zachary Sloan
- UI Design
✓ issue opened on Dec 01 2021 by jgart, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
- Quality Control Project
✓ issue opened on Nov 19 2021 by Arthur Centeno, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
- Quality Control Checks
✓ issue opened on Nov 17 2021 by jgart, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
- Gene Symbol Mappings
✓ issue opened on Nov 22 2021 by jgart, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
- Enumerating all QC checks
✓ issue opened on Nov 19 2021 by jgart, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
- Add the option to save traits uploaded with the Submit Trait option
issue opened on Jul 19 2022 by Zachary Sloan
- GeneNetwork Hacking Documentation
document created on Mar 11 2022 by Frederick Muriuki Muriithi, last updated on Jul 18 2022 by Frederick Muriuki Muriithi
- Broken continuous deployment
✓ issue opened on Jul 06 2022 by Arun Isaac, last updated on Jul 11 2022 by Frederick Muriuki Muriithi
- Add convenience templates
✓ issue opened on Oct 28 2021 by jgart, last updated on Jul 11 2022 by Arun Isaac
- Add a transient interface for tissue
✓ issue opened on Mar 28 2022 by BonfaceKilz, last updated on Jul 08 2022 by Arun Isaac
- Slow Correlations and UI crashes
✓ issue opened on Oct 18 2021 by BonfaceKilz, last updated on Jul 08 2022 by Alexander_Kabui
- Gn3 network dependency
issue opened on Mar 18 2022 by Alexander Kabui, last updated on Jul 08 2022 by Alexander_Kabui; 0 of 2 tasks done
- A linter for gnbug
✓ issue opened on Oct 28 2021 by jgart, last updated on Jul 06 2022 by Arun Isaac
- Render images in tissue web output
✓ issue opened on Apr 20 2022 by Arun Isaac, last updated on Jul 06 2022 by Arun Isaac
- Some Historical Context
document created on Jul 05 2022 by BonfaceKilz
- Clean Up
issue opened on Jan 02 2022 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac
- ProbeSetXRef
issue opened on Dec 29 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac
- ProbeSE
issue opened on Dec 30 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac
- Sheepdog
issue opened on Nov 08 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac; 3 of 17 tasks done
- GN1 Time machines
issue opened on Oct 07 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac
- Public inbox
issue opened on Jun 29 2022 by Arun Isaac
- Redirect HTTP to HTTPS
✓ issue opened on Jul 31 2021 by Arun Isaac, last updated on Jun 24 2022 by Frederick Muriuki Muriithi
- Improve Menu Generation and Move it to GN3
✓ issue opened on May 16 2022 by Frederick Muriuki Muriithi, last updated on Jun 23 2022 by Frederick Muriuki Muriithi; 2 of 3 tasks done
- Scree Plot appears to be incorrect
issue opened on May 19 2022 by Zachary Sloan, last updated on Jun 15 2022 by BonfaceKilz
- Add "Target" (Y) Column in Partial Correlations Selection Table
✓ issue opened on Apr 22 2022 by Frederick Muriuki Muriithi, last updated on May 26 2022 by Frederick Muriuki Muriithi
- GN3: Technical Debt
✓ issue opened on Feb 08 2022 by BonfaceKilz, last updated on May 25 2022 by BonfaceKilz
- issues/fetch-sample-data.gmi
✓ issue opened on Aug 09 2021 by BonfaceKilz, last updated on May 25 2022 by BonfaceKilz
- Missing CI/CD Definitions for "Service" Daemons
✓ issue opened on May 16 2022 by Frederick Muriuki Muriithi, last updated on May 16 2022 by Frederick Muriuki Muriithi; 1 of 1 tasks done
- Partial Correlation
document created on Oct 15 2021 by Frederick Muriuki Muriithi, last updated on May 16 2022 by Frederick Muriuki Muriithi
- Effect size for GEMMA is a MUST
issue opened on Apr 18 2022 by Rob Williams, last updated on Apr 29 2022 by Arun Isaac
- Make Partial Correlations Table Searchable
issue opened on Apr 22 2022 by Frederick Muriuki Muriithi
- Fix Collection Export
✓ issue opened on Apr 20 2022 by Zachary Sloan, last updated on Apr 21 2022 by Zachary Sloan
- Mapping figure can't be horizontally scrolled
✓ issue opened on Apr 20 2022 by Zachary Sloan, last updated on Apr 21 2022 by Zachary Sloan
- DOL group mapping issues
✓ issue opened on Apr 07 2022 by Zachary Sloan, last updated on Apr 20 2022 by Zachary Sloan
- Add an 'Edit Issue' Link to Tissue
✓ issue opened on Mar 24 2022 by Frederick Muriuki Muriithi, last updated on Apr 15 2022 by Arun Isaac
- Cool Interfaces We Should Emulate
issue opened on Apr 13 2022 by BonfaceKilz, last updated on Apr 14 2022 by BonfaceKilz
- Zoomed mapping result are empty for certain traits
issue opened on Apr 11 2022 by Zachary Sloan, last updated on Apr 13 2022 by Zachary Sloan
- correlation error: 'NoneType' object is not iterable
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Apr 13 2022 by Alexander Kabui
- Wrong CSV in ITP_10001 longevity dataset
✓ issue opened on Apr 11 2022 by BonfaceKilz, last updated on Apr 12 2022 by BonfaceKilz
- Building Guix packages for RISC-V
document created on Apr 08 2022 by Arun Isaac
- BXD102xBXD077F1 Error
✓ issue opened on Mar 22 2022 by Frederick Muriuki Muriithi, last updated on Apr 07 2022 by Zachary Sloan
- Adding principal component to collection returns an error
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Apr 07 2022 by Alexander Kabui
- Remove everything elastic search
✓ issue opened on Oct 22 2021 by Pjotr Prins, last updated on Apr 01 2022 by BonfaceKilz
- topics/data-uploads/inserting-traits.gmi
document created on Mar 30 2022 by Zachary Sloan, last updated on Mar 30 2022 by Zachary Sloan
- Top 10 Things to Test
document created on Mar 28 2022 by BonfaceKilz
- Error when attempt to zoom to a chromosome after mapping a PCA trait
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
- Multi-trait heat map failed
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
- Slow query
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
- Add search, select and export to datatables table
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
- Capture state of phenotypes in a HASH
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
- Fetch trait names for phenotypes
issue opened on Mar 22 2022 by Frederick Muriuki Muriithi
- Variant Browser seems to be using mm9
issue opened on Mar 22 2022 by Frederick Muriuki Muriithi
- csv export meta data are not commented out
issue opened on Mar 22 2022 by Frederick Muriuki Muriithi
- Hide stale issues in gnbug
✓ issue opened on Jan 31 2022 by Arun Isaac, last updated on Mar 22 2022 by Arun Isaac
- Sort gnbug issues most recent first
✓ issue opened on Jan 31 2022 by Arun Isaac, last updated on Mar 22 2022 by Arun Isaac
- Migrate GN1 Clustering
document created on Jul 18 2021 by Pjotr Prins, last updated on Mar 22 2022 by Frederick Muriuki Muriithi
- Remove Elastic Search
✓ issue opened on Oct 28 2021 by BonfaceKilz, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- GN1 symbols
issue opened on Nov 23 2021 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi; 0 of 2 tasks done
- Arthur mentioned last meet that GeneNetwork2 does not redirect http urls to https.
issue opened on Dec 05 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Document API endpoints for GeneNetwork3
issue opened on Mar 04 2022 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Large datasets crash gemma
issue opened on Mar 12 2022 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi; 0 of 7 tasks done
- Guix: Using guix shell with root file
issue opened on Jan 27 2022 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Return canned text if notebook description returns none
issue opened on Oct 28 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- R Kernel Dying
issue opened on Jan 17 2022 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Integrate styling of app with GN2
issue opened on Oct 28 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- When binderlite finds an unkown package in a guix manifest
issue opened on Oct 01 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Add Regular Expression to Prevent Invalid Input
issue opened on Oct 01 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Add configuration to set server name
issue opened on Nov 10 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Shapiro Wilk Test
document created on Nov 24 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Defining a scheme sexp comment with a reader macro
document created on Feb 02 2022 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Lisp For Schemers
document created on Dec 29 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Common Lisp Condition Handling
document created on Dec 28 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Debugging Lisp
document created on Dec 22 2021 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Common LISP: sly
document created on Jan 29 2022 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Common LISP: Notes
document created on Feb 09 2022 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Non-Clustered and Flippable Heatmaps
document created on Oct 01 2021 by Frederick Muriuki Muriithi, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Ideas and References
document created on Nov 22 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- gemtext cheatsheet
document created on Dec 21 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- GeneNetwork documentation
document created on Nov 16 2021 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Data Uploads: Reversing a Diff
document created on Feb 03 2022 by BonfaceKilz, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Data Uploads: Inserting Data
document created on Jan 27 2022 by BonfaceKilz, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Weechat
document created on Nov 04 2021 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- COVID-19
document created on Nov 14 2021 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Tux01 hard disk crash
issue opened on Sep 29 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- GN1 Slowness
issue opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- GN1 Production
issue opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi; 3 of 8 tasks done
- Fix GN1 Network Graph
issue opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Marker covariates implemented wrong in rqtl_wrapper.R
issue opened on Sep 22 2021 by Zachary Sloan, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Multivariate GEMMA hangs (issue 243)
issue opened on Aug 16 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Make build green
✓ issue opened on Dec 21 2021 by BonfaceKilz, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Medaka Inbred Kiyosu-Karlsruhe (MIKK) Panel
issue opened on Sep 22 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Show Template for when Git URL is not Found
issue opened on Sep 28 2021 by jgart, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- GeneNetwork CLI
document created on Sep 20 2021 by jgart, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Adding Terminal Output
document created on Aug 07 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Add button to delete an entire dataset in gn2
document created on Sep 08 2021 by BonfaceKilz, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Jupyter notebooks
document created on Sep 01 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Binding notebooks
document created on Aug 22 2021 by jgart, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- BNW interface for GN2
document created on Oct 18 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- gemma-wrapper has incomplete files
✓ issue opened on Nov 14 2021 by Pjotr Prins, last updated on Feb 17 2022 by Pjotr Prins; 2 of 2 tasks done
- GEMMA GSL ERROR: function value is not finite in brent.c
✓ issue opened on Aug 14 2021 by Pjotr Prins, last updated on Feb 17 2022 by Pjotr Prins
- file upload size limit
✓ issue opened on Feb 16 2022 by jgart, last updated on Feb 16 2022 by jgart
- Designing an issue tracker on gemini
✓ issue opened on Jul 25 2021 by Pjotr Prins, last updated on Feb 02 2022 by Pjotr Prins
- Open notebook directly if full path to notebook file is given
✓ issue opened on Nov 04 2021 by jgart, last updated on Dec 22 2021 by Frederick Muriuki Muriithi
- Nginx forwarding error regarding static assets
✓ issue opened on Nov 10 2021 by jgart, last updated on Dec 22 2021 by Frederick Muriuki Muriithi
- issues/binderlite/add-spinner-for-submit-form.gmi
✓ issue opened on Nov 10 2021 by jgart, last updated on Dec 22 2021 by Frederick Muriuki Muriithi
- Binderlite Notebook Gallery
✓ issue opened on Oct 04 2021 by jgart, last updated on Oct 21 2021 by jgart
- gnbug cat
✓ issue opened on Sep 22 2021 by jgart, last updated on Sep 28 2021 by jgart
- Maybe `gnbug` should be an alias for `gnbug list`
✓ issue opened on Sep 22 2021 by jgart, last updated on Sep 22 2021 by Arun Isaac