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Data Uploads: Zero Representation data uploads high bug
opened on Feb 08 2022 by BonfaceKilz, last updated 3 weeks ago by Munyoki Kilyungi
Variant Browser seems to be using mm9 variant browser mm9 from github stalled bug unclear
opened on Mar 22 2022 by Frederick Muriuki Muriithi
Use genodb in genenetwork
opened on Jul 19 2022 by Arun Isaac
Uninformative error when batch submitting unknown strains medium unclear metatadata
opened on May 05 2022 by BonfaceKilz
Unable to open new tab for mapping/ correlations with Chrome mapping correlation google chrome ui from github medium unclear bug
opened on Mar 23 2022 by Frederick Muriuki Muriithi
Editing traits for BXDs is failing for "%" substitution high bug
opened 4 weeks ago by Munyoki Kilyungi, last updated 4 weeks ago by Munyoki Kilyungi
Trait Page Errors on CD trait page open critical high bug
opened 13 days ago by Frederick Muriuki Muriithi
Timeout in CD cd
opened on Jul 22 2022 by Arun Isaac, last updated on Aug 17 2022 by Arun Isaac
Tests for the genodb genotype database
opened on Aug 30 2022 by Arun Isaac, last updated on Sep 05 2022 by Alexander_Kabui
Tux02 Production systems tux02 production system administration medium in progress
opened on Oct 07 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac; 14 of 22 tasks done
tux01 running out of RAM medium unclear database systems
opened on Sep 03 2022 by Pjotr Prins, last updated on Sep 05 2022 by Alexander_Kabui; 1 of 6 tasks done
Tux01 hard disk crash system tux01 hard disk crash in progress medium
opened on Sep 29 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
Sheepdog system sheepdog medium in progress halted enhancement
opened on Nov 08 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac; 3 of 17 tasks done
Second production on tux02
opened on Aug 23 2022 by Arun Isaac, last updated on Sep 05 2022 by Alexander_Kabui
Rebooting the GN production machine(s)systems tux01 tux02 production system administration medium unclear
opened on Jan 01 2022 by Pjotr Prins, last updated 9 weeks ago by Pjotr Prins; 4 of 4 tasks done
Octopus sysmaintenance systems octopus system administration completed high
opened on Oct 12 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac; 5 of 5 tasks done
MariaDB: Move to InnoDB Engine database mariadb innodb medium unclear enhancement documentation
opened on Dec 28 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac; 0 of 2 tasks done
Clean Up database mariadb database administration unclear
opened on Jan 02 2022 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac
ProbeSetXRef medium unclear enhancement documentation probesetxref database mariadb innodb
opened on Dec 29 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac
ProbeSetData database mariadb innodb enhancement medium unclear
opened on Dec 31 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac; 6 of 13 tasks done
ProbeSE database mariadb innodb probese enhancement medium unclear
opened on Dec 30 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac
ProbeData database mariadb innodb probedata enhancement medium unclear
opened on Dec 30 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac
Machine room unclear systems high system administration
opened on Nov 23 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac; 1 of 4 tasks done
Letsencrypt completed done critical bug
opened on Oct 13 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac; 2 of 2 tasks done
GN2 Time Machines systems production system administration medium in progress
opened on Aug 19 2022 by Pjotr Prins, last updated on Sep 05 2022 by Alexander_Kabui; 4 of 10 tasks done
GN1 Time machines systems system administration unclear high
opened on Oct 07 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac
Fallbacks and backups critical in progress systems fallback backup deploy enhancement
opened on Aug 31 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac; 19 of 24 tasks done
Decommission machines unclear system administration systems high
opened on Oct 06 2021 by Pjotr Prins, last updated on Oct 05 2022 by Pjotr Prins; 11 of 22 tasks done
Replace sqlalchemy with MySQLdb medium refactor
opened on Aug 29 2022 by Munyoki Kilyungi, last updated on Sep 08 2022 by Munyoki Kilyungi
MySQLdb._exceptions.OperationalError: (1040, 'Too many connections')mysql database bug
opened on Aug 29 2022 by Munyoki Kilyungi, last updated on Sep 05 2022 by Alexander_Kabui; 2 of 2 tasks done
issues/sorting-correlation-nan-vals.gmi correlations sorting nan in progress medium bug
opened 8 days ago by AlexanderKabui
Slow query slow query from github stalled high
opened on Mar 23 2022 by Frederick Muriuki Muriithi
Slow Correlations and UI crashes correlations ui crash critical bug
opened on Oct 18 2021 by BonfaceKilz, last updated on Jul 08 2022 by Alexander_Kabui
Simplify `dataset.py` in GeneNetwork2 technical debt pending bug medium
opened on Sep 13 2022 by Frederick Muriuki Muriithi
Search results for SNP looks weird ui snp from github in progress medium bug
opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated 8 weeks ago by Munyoki Kilyungi
Run Correlations in External Process bug completed correlations asynchronous jobs external process high feature
opened 7 weeks ago by Frederick Muriuki Muriithi, last updated 5 weeks ago by Frederick Muriuki Muriithi
Rework Fetching Settings refactor stalled low
opened on Sep 25 2022 by Munyoki Kilyungi, last updated 8 weeks ago by Munyoki Kilyungi
Resurrect Mechanical Rob medium enhancement in progress testing ci cd mechanical rob
opened on Aug 23 2022 by Arun Isaac, last updated on Sep 05 2022 by Alexander_Kabui
Render images in tissue web output tissue feature request
opened on Apr 20 2022 by Arun Isaac, last updated on Jul 06 2022 by Arun Isaac
Gn3 network dependency medium stalled bug network_connections ctl wgcna
opened on Mar 18 2022 by Alexander Kabui, last updated on Jul 08 2022 by Alexander_Kabui
Remove Extra Partial Correlations Options high bug completed partial correlations
opened on May 16 2022 by Frederick Muriuki Muriithi, last updated 13 days ago by Frederick Muriuki Muriithi
Remove externally loaded JS guix medium stalled ui enhancement
opened on Apr 18 2022 by BonfaceKilz, last updated 2 weeks ago by AlexanderKabui
Remove Elastic Search bug done completed chore elasticsearch
opened on Oct 28 2021 by BonfaceKilz, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
Document redis data documentation data redis unclear stalled low bug
opened on Nov 27 2021 by BonfaceKilz, last updated 8 weeks ago by Munyoki Kilyungi
Redirect HTTP to HTTPS medium completed http https
opened on Jul 31 2021 by Arun Isaac, last updated on Jun 24 2022 by Frederick Muriuki Muriithi
UI Design ui quality control medium feature-request
opened on Dec 01 2021 by jgart, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
Rewrite qc and qc-uploads in Python3 quality control in progress high rewrite
opened on Apr 11 2022 by Frederick Muriuki Muriithi, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
Quality Control Project quality control feature-request high
opened on Nov 19 2021 by Arthur Centeno, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
Quality Control Checks quality control high feature-request
opened on Nov 17 2021 by jgart, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
file upload size limit
opened on Feb 16 2022 by jgart, last updated on Feb 16 2022 by jgart
Gene Symbol Mappings
opened on Nov 22 2021 by jgart, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
Enumerating all QC checks quality control high feature-request
opened on Nov 19 2021 by jgart, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
Public inbox
opened on Jun 29 2022 by Arun Isaac
Pre-Cache Datasets cache optimisation open enhancement medium
opened 6 weeks ago by Frederick Muriuki Muriithi
Phenotype Correlation Error high completed correlations bug
opened on Sep 28 2022 by Zachary Sloan, last updated 13 days ago by Frederick Muriuki Muriithi
Each shepherd service needs its own guix profile.shepherd system administration high unclear bug
opened on Nov 03 2021 by Efraim Flashner, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
Notify a user after a minor change medium ui refactor enhancement
opened 4 weeks ago by Munyoki Kilyungi, last updated 3 weeks ago by Munyoki Kilyungi
Multi-trait heat map failed heatmap from github stalled medium bug
opened on Mar 23 2022 by Frederick Muriuki Muriithi
Missing Python Module(s) for GeneNetwork3 python-modules open high bug
opened on Sep 19 2022 by Frederick Muriuki Muriithi
Missing CI/CD Definitions for "Service" Daemons bug medium ci-cd service daemons gn3
opened on May 16 2022 by Frederick Muriuki Muriithi, last updated on May 16 2022 by Frederick Muriuki Muriithi; 1 of 1 tasks done
Miscellaneous UI issues low user-interface ui
opened on Apr 08 2022 by Zachary Sloan, last updated on Aug 08 2022 by Munyoki Kilyungi
Editing Metadata [Improvements to Make]metadata phenotypes stalled high ui
opened on Mar 31 2022 by BonfaceKilz, last updated 8 weeks ago by Munyoki Kilyungi; 7 of 11 tasks done
Materialised Views for Correlations pending correlations materialised views optimisation high feature improvement
opened 7 weeks ago by Frederick Muriuki Muriithi, last updated 7 weeks ago by Frederick Muriuki Muriithi
Zoomed mapping result are empty for certain traits high in progress bug mapping user interface display failure
opened on Apr 11 2022 by Zachary Sloan, last updated on Apr 13 2022 by Zachary Sloan
Mapping figure can't be horizontally scrolled mapping medium
opened on Apr 20 2022 by Zachary Sloan, last updated on Apr 21 2022 by Zachary Sloan
Mapping: Haley-Knott Regression: Zooming Bug bug medium mapping haley-knott regression
opened on Sep 22 2022 by Zachary Sloan, last updated on Sep 28 2022 by Alexander_Kabui
Make Partial Correlations Table Searchable partial correlations datatables pending migration feature-request medium
opened on Apr 22 2022 by Frederick Muriuki Muriithi
Integrate Feed Analyser twitter feed analyser medium stalled feature-request
opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated 8 weeks ago by Munyoki Kilyungi
Improve Menu Generation and Move it to GN3 menu generation gn2 gn3 completed medium bug
opened on May 16 2022 by Frederick Muriuki Muriithi, last updated on Jun 23 2022 by Frederick Muriuki Muriithi; 2 of 3 tasks done
Implementing parallel correlation with rust correlation rust parralel completed medium upgrade
opened on Apr 25 2022 by Alexander Kabui, last updated 13 days ago by Frederick Muriuki Muriithi; 8 of 12 tasks done
Sort gnbug issues most recent first tissue gnbug stalled medium enhancement feature-request
opened on Jan 31 2022 by Arun Isaac, last updated on Mar 22 2022 by Arun Isaac
Maybe `gnbug` should be an alias for `gnbug list` bug
opened on Sep 22 2021 by jgart, last updated on Sep 22 2021 by Arun Isaac
Hide stale issues in gnbug tissue gnbug low unclear enhancement feature-request
opened on Jan 31 2022 by Arun Isaac, last updated on Mar 22 2022 by Arun Isaac
gnbug cat feature-request
opened on Sep 22 2021 by jgart, last updated on Sep 28 2021 by jgart
Add a transient interface for tissue low linter tissue feature-request
opened on Mar 28 2022 by BonfaceKilz, last updated on Jul 08 2022 by Arun Isaac
A linter for gnbug under discussion low gnbug linter tissue feature-request
opened on Oct 28 2021 by jgart, last updated on Jul 06 2022 by Arun Isaac
Add convenience templates tissue gnbug low feature-request
opened on Oct 28 2021 by jgart, last updated on Jul 11 2022 by Arun Isaac
GN3: Technical Debt gn3 enhancement medium
opened on Feb 08 2022 by BonfaceKilz, last updated on May 25 2022 by BonfaceKilz
GN1 annotation page broken gn1 genenetwork1 annotation from github bug overdue high
opened on Mar 23 2022 by Frederick Muriuki Muriithi
Global search doesn't seem to return phenotype traits global search phenotypes ongoing bug high
opened 3 weeks ago by Zachary Sloan
Global search does not return results global search from github unclear bug critical
opened on Mar 22 2022 by Frederick Muriuki Muriithi, last updated 7 weeks ago by Arun Isaac
Global search does not close connections properly (and is slow)global search db connections medium priority from github stalled medium bug
opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated 7 weeks ago by Arun Isaac
Genotype Metadata medium feature
opened 6 days ago by Munyoki Kilyungi
Genotype correlations only returning results from first chromosome correlations ongoing high bug
opened 6 weeks ago by Zachary Sloan
Enable all DataTables to call the same code tables javascript open in progress refactor medium
opened on Jul 26 2022 by Zachary Sloan, last updated on Jul 27 2022 by Zachary Sloan
GN1 symbols gn1 symbols unclear medium bug
opened on Nov 23 2021 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi; 0 of 2 tasks done
GN1 Slowness gn1 high bug
opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
GN1 Production in progress gn1 critical bug
opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi; 3 of 8 tasks done
GN1 Pairscan unclear missing dependency binary blob gn1 critical bug
opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
Fix GN1 Network Graph in progress gn1 network graph high bug
opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
Marker mapping marker unclear high bug
opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
Remove everything elastic search elasticsearch purge done low enhancement
opened on Oct 22 2021 by Pjotr Prins, last updated on Apr 01 2022 by BonfaceKilz
Proxy has hard coded URLs proxy configuration settings unclear medium bug
opened on Oct 22 2021 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
Marker covariates implemented wrong in rqtl_wrapper.R medium marker covariates in progress halted bug
opened on Sep 22 2021 by Zachary Sloan, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
Markdown docs gn1 documentation unclear medium enhancement
opened on Sep 10 2022 by Pjotr Prins
Better Logging low deployment 404 enhancement
opened on Aug 23 2022 by Munyoki Kilyungi, last updated 8 weeks ago by Munyoki Kilyungi
Arthur mentioned last meet that GeneNetwork2 does not redirect http urls to https.gn2 http https unclear medium bug
opened on Dec 05 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
Global search problems global search brca2 bug low later
opened on Aug 26 2022 by Pjotr Prins, last updated 7 weeks ago by Arun Isaac; 1 of 2 tasks done
Genewiki conversion gn1 documentation unclear medium enhancement
opened on Aug 26 2022 by Pjotr Prins, last updated on Sep 05 2022 by Alexander_Kabui; 0 of 3 tasks done
Need Guix packages guix packages environments medium unclear bug
opened on Mar 12 2022 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
Document API endpoints for GeneNetwork3 gn3 documentation
opened on Mar 04 2022 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
genecup is currently running as root on penguin2.high unclear genecup penguin2 failure
opened on Aug 15 2021 by Efraim Flashner, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
GEMMA should report name of missing genotype file
opened on Aug 20 2022 by Arun Isaac, last updated on Sep 19 2022 by Arun Isaac
Multivariate GEMMA hangs (issue 243)high unclear gemma failure
opened on Aug 16 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
gemma-wrapper has incomplete files
opened on Nov 14 2021 by Pjotr Prins, last updated on Feb 17 2022 by Pjotr Prins; 2 of 2 tasks done
Databases Getting Out of Wack database gemma reaper unclear bug high
opened on Mar 03 2022 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
Large datasets crash gemma gemma crash high bug unclear
opened on Mar 12 2022 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi; 0 of 7 tasks done
GEMMA GSL ERROR: function value is not finite in brent.c
opened on Aug 14 2021 by Pjotr Prins, last updated on Feb 17 2022 by Pjotr Prins
Full text search
opened on Jun 30 2022 by Arun Isaac, last updated 6 weeks ago by Arun Isaac; 0 of 1 tasks done
Scree Plot appears to be incorrect correlations pca scree-plot in-progress medium bug
opened on May 19 2022 by Zachary Sloan, last updated on Jun 15 2022 by BonfaceKilz
Fix Missing Genotype Files for GEMMA gemma technical debt pending bug medium
opened on Sep 13 2022 by Frederick Muriuki Muriithi, last updated on Sep 20 2022 by Frederick Muriuki Muriithi; 1 of 3 tasks done
Correlations are not including f1 parents correlation f1 ongoing high bug
opened 4 weeks ago by AlexanderKabui, last updated 13 days ago by Frederick Muriuki Muriithi
Long samplenames overflow in Haplotype Analyst global search phenotypes ongoing ui medium
opened 3 weeks ago by Zachary Sloan
Fix some display issue with the Correlation Results table (plus add column resizing)correlation datatables javascript bug feature-enhancement medium
opened on May 11 2022 by Zachary Sloan, last updated 13 days ago by Zachary Sloan
Fix Collection Export collections high bug
opened on Apr 20 2022 by Zachary Sloan, last updated on Apr 21 2022 by Zachary Sloan
Fix Case Attribute Work (Same Columns)case attributes data editing bug
opened on Apr 06 2022 by BonfaceKilz, last updated 8 weeks ago by Munyoki Kilyungi; 9 of 9 tasks done
Fix Broken UTF-8 characters in our Database high database
opened 6 days ago by Munyoki Kilyungi, last updated 6 days ago by Munyoki Kilyungi
Make build green build complete failure
opened on Dec 21 2021 by BonfaceKilz, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
Fetch trait names for phenotypes phenotype from github feature-request enhancement unclear pending
opened on Mar 22 2022 by Frederick Muriuki Muriithi
issues/fetch-sample-data.gmi medium sample data gn2 gn3
opened on Aug 09 2021 by BonfaceKilz, last updated on May 25 2022 by BonfaceKilz
Failing Tests genenetwork2 tests failure completed done critical bug
opened on Aug 03 2022 by Frederick Muriuki Muriithi, last updated on Sep 20 2022 by Alexander_Kabui
Error when attempt to zoom to a chromosome after mapping a PCA trait pca from github high priority unclear high bug
opened on Mar 23 2022 by Frederick Muriuki Muriithi
Error when fetching SNPs in a search page high critical in progress
opened on Sep 28 2022 by Munyoki Kilyungi, last updated 8 weeks ago by Munyoki Kilyungi
Allow analyses to be done between traits from "individuals" groups and their corresponding "main" group data meta-data open in progress feature-request medium
opened on Jul 21 2022 by Zachary Sloan
Effect size for GEMMA is a MUST
opened on Apr 18 2022 by Rob Williams, last updated on Apr 29 2022 by Arun Isaac
Cannot Edit Metadata of BXD Traits Effectively high stalled metadata
opened on Apr 28 2022 by BonfaceKilz, last updated 8 weeks ago by Munyoki Kilyungi; 10 of 12 tasks done
Do Bulk Query for Correlation Results' Display enhancement correlations bulk queries optimisation high
opened 6 weeks ago by Frederick Muriuki Muriithi, last updated 6 weeks ago by Frederick Muriuki Muriithi
Handle Configuration Files gn2 configuration deploy stalled medium bug
opened on Dec 03 2021 by BonfaceKilz, last updated 8 weeks ago by Munyoki Kilyungi
Decouple Tasks in Correlations Results Display ongoing correlations medium bug
opened 6 weeks ago by Frederick Muriuki Muriithi, last updated 11 days ago by Frederick Muriuki Muriithi
Dataset Queried Twice complete performance enhancement optimisation medium bug
opened 7 weeks ago by Frederick Muriuki Muriithi, last updated 2 weeks ago by AlexanderKabui
Hanging database high unclear database bug
opened on Dec 21 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
Database Migrations pending database migrations high feature
opened 7 weeks ago by Frederick Muriuki Muriithi
Errors, defects and missing data in the database
opened 6 weeks ago by Arun Isaac, last updated 5 weeks ago by Arun Isaac
Medaka Inbred Kiyosu-Karlsruhe (MIKK) Panel medaka mikk unclear data
opened on Sep 22 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
Add the option to save traits uploaded with the Submit Trait option data meta-data open in progress feature-request medium
opened on Jul 19 2022 by Zachary Sloan
csv export meta data are not commented out csv from github meta data unclear bug high
opened on Mar 22 2022 by Frederick Muriuki Muriithi
Wrong CSV in ITP_10001 longevity dataset critical bug in progress metadata phenotypes critical bug
opened on Apr 11 2022 by BonfaceKilz, last updated on Apr 12 2022 by BonfaceKilz
Create a new UI language for gn2 low unclear ui
opened on Apr 18 2022 by BonfaceKilz
Correlations time out critical completed bug correlations time out
opened on Aug 06 2021 by Pjotr Prins, last updated 13 days ago by Frederick Muriuki Muriithi; 2 of 3 tasks done
Correlations: Returning Fewer Results correlations fewer results ongoing high
opened 4 weeks ago by AlexanderKabui, last updated 10 days ago by Zachary Sloan
Correlations: Fewer Results than Expected correlations open critical bug
opened 13 days ago by Frederick Muriuki Muriithi
Correlations are wrongly always using all samples correlations completed high bug
opened 6 weeks ago by Zachary Sloan, last updated 13 days ago by Frederick Muriuki Muriithi
Correlations timing out for "UMUTAffy Hippocampus Exon (Feb09) RMA" correlations (and probably some others)correlations ongoing high bug
opened 7 weeks ago by Zachary Sloan, last updated 13 days ago by Frederick Muriuki Muriithi
Correlations fail for at least some ProbeSet datasets (as the target dataset)correlations completed high bug
opened 7 weeks ago by Zachary Sloan, last updated 13 days ago by Frederick Muriuki Muriithi
correlation error: 'NoneType' object is not iterable correlations from github high priority completed high bug
opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Apr 13 2022 by Alexander Kabui
Cool Interfaces We Should Emulate low stalled ui
opened on Apr 13 2022 by BonfaceKilz, last updated on Apr 14 2022 by BonfaceKilz
Fix Case Attribute Work (Consecutive CRUD applications)medium case attributes data editing bug stalled
opened on Apr 06 2022 by BonfaceKilz, last updated 8 weeks ago by Munyoki Kilyungi; 0 of 2 tasks done
Case Attribute Editing Problems high stalled bug metadata case-attributes
opened on May 02 2022 by Zachary Sloan, last updated 8 weeks ago by Munyoki Kilyungi
Capture state of phenotypes in a HASH phenotypes rest ui medium in progress enhancement feature-request
opened on Mar 23 2022 by Frederick Muriuki Muriithi
Capture Data on the BXDs in RDF rdf bxd rest from github high priority feature-request enhancement unclear high
opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated 8 weeks ago by Munyoki Kilyungi
Using guix-bioinformatics in a channels.scm file medium in progress guix-bioinformatics bug
opened on Aug 15 2021 by Efraim Flashner, last updated 8 weeks ago by Pjotr Prins
Buggy Use of `urllib.parse.urljoin`url pending low bug
opened on Jul 25 2022 by Frederick Muriuki Muriithi
Broken continuous deployment completed critical
opened on Jul 06 2022 by Arun Isaac, last updated on Jul 11 2022 by Frederick Muriuki Muriithi
Guix: Using guix shell with root file guix guix shell root file low unclear
opened on Jan 27 2022 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
Binderlite Notebook Gallery
opened on Oct 04 2021 by jgart, last updated on Oct 21 2021 by jgart
Show Template for when Git URL is not Found binderlite template medium bug
opened on Sep 28 2021 by jgart, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
Return canned text if notebook description returns none binderlite notebooks in progress high bug
opened on Oct 28 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
Open notebook directly if full path to notebook file is given feature-request
opened on Nov 04 2021 by jgart, last updated on Dec 22 2021 by Frederick Muriuki Muriithi
R Kernel Dying r unclear high bug
opened on Jan 17 2022 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
Integrate styling of app with GN2 binderlite notebooks styling ui medium bug ongoing in progress
opened on Oct 28 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
When binderlite finds an unkown package in a guix manifest high binderlite notebooks unclear bug
opened on Oct 01 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
Nginx forwarding error regarding static assets
opened on Nov 10 2021 by jgart, last updated on Dec 22 2021 by Frederick Muriuki Muriithi
Terminal output to the browser binderlite notebooks ansi2html medium feature-request
opened on Oct 28 2021 by jgart, last updated 8 weeks ago by Arun Isaac
issues/binderlite/add-spinner-for-submit-form.gmi feature-request
opened on Nov 10 2021 by jgart, last updated on Dec 22 2021 by Frederick Muriuki Muriithi
Add Regular Expression to Prevent Invalid Input high binderlite notebooks unclear bug
opened on Oct 01 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
Add configuration to set server name binderlite notebooks configuration high unclear feature-request
opened on Nov 10 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
Automatically find broken links on GN2 gn1 gn2 broken links from github completed medium bug
opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated 8 weeks ago by Munyoki Kilyungi; 2 of 2 tasks done
Automated Testing testing ci cd enhancement medium
opened on Feb 10 2022 by Frederick Muriuki Muriithi, last updated 8 weeks ago by Munyoki Kilyungi; 0 of 10 tasks done
Clean up Authorisation medium authorisation
opened on Nov 19 2021 by BonfaceKilz, last updated 8 weeks ago by Munyoki Kilyungi; 4 of 4 tasks done
Annotation mapping architecture open in progress enhancement medium
opened on Sep 14 2022 by Pjotr Prins, last updated on Sep 14 2022 by Pjotr Prins; 0 of 5 tasks done
Adding principal component to collection returns an error collections from github bug high unclear
opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Apr 07 2022 by Alexander Kabui
Add "Target" (Y) Column in Partial Correlations Selection Table partial correlations datatables completed migration feature-request medium
opened on Apr 22 2022 by Frederick Muriuki Muriithi, last updated on May 26 2022 by Frederick Muriuki Muriithi
Add search, select and export to datatables table datatables ui low priority unclear feature-request low
opened on Mar 23 2022 by Frederick Muriuki Muriithi
Add mouse data-set in progress medium
opened on Jun 30 2022 by BonfaceKilz, last updated 8 weeks ago by Munyoki Kilyungi; 0 of 4 tasks done
Annotate traits page with metadata from RDF rdf critical metadata in progress high
opened on Sep 30 2022 by Munyoki Kilyungi, last updated 8 weeks ago by Munyoki Kilyungi; 9 of 16 tasks done
Add track for showing which regions in mouse/rat correspond to human regions to the mapping figure mapping open in progress feature-request medium
opened on Jul 21 2022 by Zachary Sloan, last updated on Sep 14 2022 by Pjotr Prins
Add an 'Edit Issue' Link to Tissue tissue edit issue open in progress feature-request enhancement medium
opened on Mar 24 2022 by Frederick Muriuki Muriithi, last updated on Apr 15 2022 by Arun Isaac
'TempDataSet' object has no attribute 'query_for_group' (error)tempdataset from github bug high
opened on Mar 22 2022 by Frederick Muriuki Muriithi, last updated on Sep 28 2022 by Alexander_Kabui
Designing an issue tracker on gemini help wanted documentation later testing enhancement bug request critical bug in progress
opened on Jul 25 2021 by Pjotr Prins, last updated on Feb 02 2022 by Pjotr Prins
DOL group mapping issues mapping medium bug
opened on Apr 07 2022 by Zachary Sloan, last updated on Apr 20 2022 by Zachary Sloan
BXD102xBXD077F1 Error correlations from github unclear critical bug
opened on Mar 22 2022 by Frederick Muriuki Muriithi, last updated on Apr 07 2022 by Zachary Sloan
Xapian scalability
Xapian indexing
UTHSC VPN with free software
Using PDB to Troubleshoot Python Code
Useful Shell Scripts
Use exceptions to indicate errors
GeneNetwork CLI
Adding Terminal Output
Add button to delete an entire dataset in gn2
Top 10 Things to Test
GN Checklist
Virtuoso
Shepherd
Orchestration and fallbacks
topics/systems/migrate-p2.gmi
MariaDB
GN Services
DNS changes
CI/ CD for genetwork projects
BigBlueButton
Backup Drops
Setting up Local Development Database
Running pudb From an External Environment
Debug RISC-V assembly with QEMU and GDB
Building Guix packages for RISC-V
Queries and Prepared Statements in Python
Shapiro Wilk Test
Using pudb
Using pudb with pytest
Profiling Python code
Phenotype Naming Conventions
Information about lizardfs, and some usage suggestions
Next Steps
Reproducibility
port map
Julia Pluto
Jupyter notebooks
Guix Containers
Binding notebooks
CLI Features
Maybe monad
LMM Notes
Defining a scheme sexp comment with a reader macro
Lisp For Schemers
Common Lisp Condition Handling
Debugging Lisp
Common LISP: sly
Common LISP: Notes
Developer links for
Interesting links for coders
Updating Guix profiles (for production and development)
Partial Correlation
Non-Clustered and Flippable Heatmaps
Migrate GN1 Clustering
Genotype database
Ideas and References
gemtext cheatsheet
Replace IPFS
GeneNetwork Hacking Documentation
GeneNetwork documentation
Data Uploads: Reversing a Diff
topics/data-uploads/inserting-traits.gmi
Data Uploads: Inserting Data
topics/data-uploads/editing-data.gmi
Some Historical Context
Coding guidelines
Coding Anti-Patterns
Weechat
Building a ~guix pack~ for Environment Sharing
BNW interface for GN2
Improving Logging in GN2
Automated Testing
User Registration
Put user info in the a/c name in the menu
Replace Hard coded authentication with gn-proxy
Password Reset
Authentication/authorisation design
COVID-19
Add Metadata To The Trait Page (RDF)