- Precompute mapping input data
document created on Mar 20 2023 by Pjotr Prins, last updated 15 hours ago by Pjotr Prins
- Add/Share Datasets HTMX Page
✓ issue opened 7 days ago by Munyoki Kilyungi, last updated 3 days ago by Munyoki Kilyungi
- Upload Strains
issue opened 5 days ago by Frederick Muriuki Muriithi, last updated 5 days ago by Frederick Muriuki Muriithi; 0 of 5 tasks done
- My Software Development Journey so far,
document created 7 days ago by fetche-lab, last updated 6 days ago by Lisso_
- GeneNetwork Authentication/Authorisation Architecture
document created 6 days ago by Frederick Muriuki Muriithi
- Clean up Authorisation
✓ issue opened on Nov 19 2021 by BonfaceKilz, last updated 6 days ago by Frederick Muriuki Muriithi; 4 of 4 tasks done
- Put user info in the a/c name in the menu
document created on Mar 14 2022 by Frederick Muriuki Muriithi, last updated 6 days ago by Frederick Muriuki Muriithi
- Replace Hard coded authentication with gn-proxy
document created on Mar 14 2022 by Frederick Muriuki Muriithi, last updated 6 days ago by Frederick Muriuki Muriithi
- Authentication/authorisation design
document created on Oct 17 2022 by Pjotr Prins, last updated 6 days ago by Frederick Muriuki Muriithi
- Automated Testing
document created on Oct 12 2022 by Munyoki Kilyungi, last updated 8 days ago by Pjotr Prins
- Add Metadata To The Trait Page (RDF)
document created on Sep 28 2022 by Munyoki Kilyungi, last updated 8 days ago by Pjotr Prins
- Utility Scripts
document created on Jun 05 2023 by Frederick Muriuki Muriithi, last updated 8 days ago by Pjotr Prins
- Use exceptions to indicate errors
document created on Aug 25 2022 by Arun Isaac, last updated 8 days ago by Pjotr Prins
- Maybe monad
document created on Sep 25 2022 by Munyoki Kilyungi, last updated 8 days ago by Pjotr Prins
- Coding guidelines
document created on Aug 25 2022 by Arun Isaac, last updated 8 days ago by Pjotr Prins
- Coding Anti-Patterns
document created on Sep 29 2022 by Munyoki Kilyungi, last updated 8 days ago by Pjotr Prins
- Improving Logging in GN2
document created on Aug 23 2022 by Munyoki Kilyungi, last updated 8 days ago by Pjotr Prins
- Building a ~guix pack~ for Environment Sharing
document created on Sep 13 2022 by Frederick Muriuki Muriithi, last updated 8 days ago by Pjotr Prins
- How to Submit a Temp trait (for testing purposes or otherwise)
document created on Aug 02 2023 by Zachary Sloan, last updated 8 days ago by Pjotr Prins
- How to Start GN2 and GN3
document created on Dec 08 2022 by Zachary Sloan, last updated 8 days ago by Pjotr Prins
- Starting GN1
document created on Dec 08 2022 by Pjotr Prins, last updated 8 days ago by Pjotr Prins
- Phenotype Naming Conventions
document created on Nov 23 2022 by Munyoki Kilyungi, last updated 8 days ago by Pjotr Prins
- Developing against GeneNetwork
document created on Jun 18 2023 by Pjotr Prins, last updated 8 days ago by Pjotr Prins
- UTHSC VPN with free software
document created on Aug 22 2022 by Arun Isaac, last updated 8 days ago by Pjotr Prins
- Useful Shell Scripts
document created on Oct 06 2022 by Munyoki Kilyungi, last updated 8 days ago by Pjotr Prins
- Our virtuoso instances
document created on Mar 31 2023 by Arun Isaac, last updated 8 days ago by Pjotr Prins
- Machines
document created on Oct 04 2023 by Pjotr Prins, last updated 8 days ago by Pjotr Prins
- Installation
document created on Jun 18 2023 by Pjotr Prins, last updated 8 days ago by Pjotr Prins
- Deploy GeneNetwork
document created on Jan 18 2023 by Arun Isaac, last updated 8 days ago by Pjotr Prins
- Setting up Local Development Database
document created on Aug 19 2022 by Frederick Muriuki Muriithi, last updated 8 days ago by Pjotr Prins
- CI Rethink slides
document created on Jul 13 2023 by Arun Isaac, last updated 8 days ago by Pjotr Prins
- Continuous Deployment logs
document created on Feb 15 2023 by Arun Isaac, last updated 8 days ago by Pjotr Prins
- Using pudb
document created on Dec 21 2021 by jgart, last updated 8 days ago by Pjotr Prins
- Using PDB to Troubleshoot Python Code
document created 8 days ago by Pjotr Prins
- Running pudb From an External Environment
document created 8 days ago by Pjotr Prins
- Using pudb with pytest
document created on Dec 21 2021 by jgart, last updated 8 days ago by Pjotr Prins
- Profiling Python code
document created 8 days ago by Pjotr Prins
- Adding Quantitative Tracks Using BigWig Files
document created 4 weeks ago by cel7t, last updated 8 days ago by Pjotr Prins
- Queries and Prepared Statements in Python
document created on Sep 27 2022 by Frederick Muriuki Muriithi, last updated 8 days ago by Pjotr Prins
- Genotype database
document created on Jun 03 2022 by Arun Isaac, last updated 8 days ago by Pjotr Prins
- Xapian search
document created on May 02 2023 by Arun Isaac, last updated 8 days ago by Pjotr Prins
- Xapian search queries
document created on Feb 13 2023 by Arun Isaac, last updated 8 days ago by Pjotr Prins
- Xapian scalability
document created on Oct 10 2022 by Arun Isaac, last updated 8 days ago by Pjotr Prins
- Xapian indexing
document created on Oct 30 2022 by Arun Isaac, last updated 8 days ago by Pjotr Prins
- topics/xapian/xapian-indexing-on-tux01.gmi
document created on Jul 27 2023 by Zachary Sloan, last updated 8 days ago by Pjotr Prins
- Guix system containers and how we use them
document created on Mar 31 2023 by Arun Isaac, last updated 8 days ago by Pjotr Prins
- Updating Guix profiles (for production and development)
document created on Jun 14 2022 by Arun Isaac, last updated 8 days ago by Pjotr Prins
- Information about lizardfs, and some usage suggestions
document created on Jul 18 2021 by Pjotr Prins, last updated 8 days ago by Pjotr Prins
- Shepherd
document created on Aug 27 2021 by Pjotr Prins, last updated 8 days ago by Pjotr Prins
- Add Documentation For Set Up and Data Retrieval For AI Repo
issue opened 10 days ago by Munyoki Kilyungi
- Minor Phenotype Page UI updates
✓ issue opened 11 days ago by Munyoki Kilyungi, last updated 10 days ago by Munyoki Kilyungi; 6 of 6 tasks done
- Genotype correlations only returning results from first chromosome
✓ issue opened on Oct 21 2022 by Zachary Sloan, last updated 11 days ago by Zachary Sloan
- Buggy Use of `urllib.parse.urljoin`
✓ issue opened on Jul 25 2022 by Frederick Muriuki Muriithi, last updated 13 days ago by Frederick Muriuki Muriithi
- Big File Upload Fails
✓ issue opened on Jan 17 2023 by Frederick Muriuki Muriithi, last updated 13 days ago by Frederick Muriuki Muriithi
- Add to Collection Error
✓ issue opened on Oct 09 2023 by Frederick Muriuki Muriithi, last updated 13 days ago by Frederick Muriuki Muriithi
- Rewrite qc and qc-uploads in Python3
✓ issue opened on Apr 11 2022 by Frederick Muriuki Muriithi, last updated 13 days ago by Frederick Muriuki Muriithi
- Conflating `dataset_id` with `inbred_set_id`
✓ issue opened on Jul 18 2023 by Frederick Muriuki Muriithi, last updated 13 days ago by Frederick Muriuki Muriithi
- Rework Resources
issue opened on Sep 06 2023 by Frederick Muriuki Muriithi, last updated 13 days ago by Frederick Muriuki Muriithi; 2 of 3 tasks done
- Remove bcrypt as a Dependency
✓ issue opened 6 weeks ago by Frederick Muriuki Muriithi, last updated 13 days ago by Frederick Muriuki Muriithi
- Phenotype Correlation Error
✓ issue opened on Sep 28 2022 by Zachary Sloan, last updated 13 days ago by Frederick Muriuki Muriithi
- Handling Resource Links in ProbeSet Page
issue opened 3 weeks ago by Munyoki Kilyungi
- Set-up Virtuoso on Production
issue opened 3 weeks ago by Munyoki Kilyungi
- Export Uploaded Data to LMDB and RDF Stores
issue opened 5 weeks ago by Frederick Muriuki Muriithi, last updated 4 weeks ago by Frederick Muriuki Muriithi; 0 of 6 tasks done
- MariaDB
document created on Oct 26 2021 by Pjotr Prins, last updated 4 weeks ago by Pjotr Prins
- Backup Drops
document created on Oct 27 2022 by Pjotr Prins, last updated 4 weeks ago by Pjotr Prins
- Testing performance
document created on Mar 08 2023 by Pjotr Prins, last updated 4 weeks ago by Pjotr Prins
- Move Data Endpoints from GN2 to GN3
✓ issue opened 5 weeks ago by Frederick Muriuki Muriithi, last updated 5 weeks ago by Frederick Muriuki Muriithi
- Gn Markdown Editor implementation
issue opened 5 weeks ago by Alexander_Kabui; 4 of 5 tasks done
- Octopus sysmaintenance
issue opened on Oct 12 2021 by Pjotr Prins, last updated 6 weeks ago by Pjotr Prins; 0 of 8 tasks done
- Rework Test: Remove redis as Test Dependency
issue opened 6 weeks ago by Frederick Muriuki Muriithi
- UI Frontend for RDF
issue opened on Oct 11 2023 by Munyoki Kilyungi, last updated 7 weeks ago by Munyoki Kilyungi
- Bug with linking data
issue opened on Jul 26 2023 by Zachary Sloan, last updated 8 weeks ago by Frederick Muriuki Muriithi
- GeneNetwork/AI workshop
document created on Oct 08 2023 by Pjotr Prins, last updated 9 weeks ago by Pjotr Prins
- Fix Failing MR Failing Tests
✓ issue opened on Sep 13 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Fix possible python 3.10 linting errors after bump from 3.9
✓ issue opened on Jun 06 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Migrate to Python3.10
✓ issue opened on Jul 12 2023 by Frederick Muriuki Muriithi, last updated on Oct 11 2023 by Munyoki Kilyungi; 0 of 1 tasks done
- Rework Fetching Settings
✓ issue opened on Sep 25 2022 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Model Menu In RDF
✓ issue opened on Apr 18 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Integrate Feed Analyser
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Incorrect PubMed IDs in the Publication Table
✓ issue opened on May 09 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Improve sparql results
✓ issue opened on Jul 07 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Autogenerate documentation: trees, and labels
✓ issue opened on Jun 23 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Try out Auth Code Locally
✓ issue opened on Apr 21 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi; 2 of 2 tasks done
- Order entries in CSV dump
✓ issue opened on Mar 20 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Modelling Phenotype Data
✓ issue opened on Aug 08 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Genotype Metadata
✓ issue opened on Nov 29 2022 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Need Guix packages
✓ issue opened on Mar 12 2022 by Pjotr Prins, last updated on Oct 11 2023 by Munyoki Kilyungi
- Create a new UI language for gn2
✓ issue opened on Apr 18 2022 by BonfaceKilz, last updated on Oct 11 2023 by Munyoki Kilyungi
- Broken Indexing
✓ issue opened on May 03 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Ontologies
document created on Jul 31 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Large Language Models (LLMs) & Metadata
document created on Jun 23 2023 by Solomon Shelby, last updated on Oct 08 2023 by Solomon Shelby
- Decommission machines
issue opened on Oct 06 2021 by Pjotr Prins, last updated on Sep 22 2023 by Pjotr Prins; 11 of 22 tasks done
- Gn Markdown Editor implementation
issue opened on Aug 07 2023 by Alexander_Kabui, last updated on Sep 11 2023 by Alexander_Kabui; 4 of 5 tasks done
- Move Search to Xapian
issue opened on Sep 08 2023 by Munyoki Kilyungi
- Editing Case-Attributes
document created on Jul 07 2023 by Frederick Muriuki Muriithi, last updated on Sep 06 2023 by Frederick Muriuki Muriithi
- Understanding GN's Classification Scheme
document created on Aug 29 2023 by Munyoki Kilyungi, last updated on Aug 31 2023 by Munyoki Kilyungi
- Invalid Token Error
✓ issue opened on Aug 25 2023 by Zachary Sloan, last updated on Aug 31 2023 by Frederick Muriuki Muriithi
- Fix Broken UTF-8 characters in our Database
✓ issue opened on Nov 29 2022 by Munyoki Kilyungi, last updated on Aug 29 2023 by Munyoki Kilyungi
- GNSoC 2023
document created on Jun 21 2023 by Pjotr Prins, last updated on Aug 24 2023 by Pjotr Prins
- This document has some useful SQL tricks
document created on Aug 08 2023 by Munyoki Kilyungi, last updated on Aug 11 2023 by Munyoki Kilyungi
- MariaDB: Move to InnoDB Engine
issue opened on Dec 28 2021 by Pjotr Prins, last updated on Aug 11 2023 by Munyoki Kilyungi; 0 of 6 tasks done
- Improving Metadata Audit
document created on Jul 25 2023 by Frederick Muriuki Muriithi, last updated on Aug 11 2023 by Frederick Muriuki Muriithi
- CI rethink
issue opened on Jun 23 2023 by Arun Isaac, last updated on Aug 09 2023 by Arun Isaac; 4 of 8 tasks done
- Virtuoso
document created on Aug 27 2021 by Pjotr Prins, last updated on Aug 05 2023 by Pjotr Prins
- Temporary Traits Access Concerns
issue opened on Aug 03 2023 by Frederick Muriuki Muriithi
- Temp traits don't seem to be handled by the authorization system
issue opened on Jul 28 2023 by Zachary Sloan, last updated on Aug 02 2023 by Frederick Muriuki Muriithi
- Brittle Fix for Editing Metadata
issue opened on Aug 02 2023 by Frederick Muriuki Muriithi
- Snellius
document created on Mar 20 2023 by Pjotr Prins, last updated on Aug 01 2023 by Pjotr Prins
- Paginate Resources Page
issue opened on Jul 27 2023 by Frederick Muriuki Muriithi
- UI issues/improvements
issue opened on Jul 26 2023 by Zachary Sloan
- Reasons There is HTML and CSS in GN3
document created on Jul 26 2023 by Frederick Muriuki Muriithi
- Search is case sensitive
issue opened on Jul 26 2023 by Arun Isaac
- rewrite sampledata fetching with genofiles using scheme
issue opened on Jul 19 2023 by Alexander_Kabui, last updated on Jul 26 2023 by Alexander_Kabui; 2 of 6 tasks done
- Guixify LLM container
✓ issue opened on Jul 20 2023 by Munyoki Kilyungi, last updated on Jul 25 2023 by Munyoki Kilyungi
- Delete Rejected Diffs from Database
✓ issue opened on Jul 25 2023 by Frederick Muriuki Muriithi, last updated on Jul 25 2023 by Frederick Muriuki Muriithi
- Editing Trait Metadata and Sample Data
document created on Jul 07 2023 by Frederick Muriuki Muriithi, last updated on Jul 25 2023 by Frederick Muriuki Muriithi
- Editing Data
document created on Nov 23 2021 by BonfaceKilz, last updated on Jul 25 2023 by Frederick Muriuki Muriithi
- Show "Edit" Button for All Users
✓ issue opened on Jul 24 2023 by Frederick Muriuki Muriithi, last updated on Jul 24 2023 by Frederick Muriuki Muriithi
- Show Last Edited
issue opened on Jul 24 2023 by Frederick Muriuki Muriithi
- Queries for fetching/editing metadata
document created on Jul 22 2023 by Munyoki Kilyungi
- genenetwork2 CD sometimes fails to restart
issue opened on Mar 17 2023 by Arun Isaac, last updated on Jul 14 2023 by Munyoki Kilyungi
- CI/ CD for genetwork projects
document created on Oct 12 2022 by Munyoki Kilyungi, last updated on Jul 13 2023 by Pjotr Prins
- Fetch trait data using genofiles
issue opened on Jul 11 2023 by Alexander_Kabui, last updated on Jul 13 2023 by Alexander_Kabui; 2 of 3 tasks done
- Sample Data not Appearing in Phenotype-Editing Page
✓ issue opened on Jul 12 2023 by Frederick Muriuki Muriithi, last updated on Jul 12 2023 by Frederick Muriuki Muriithi
- Editing Phenotypes
document created on Jul 07 2023 by Frederick Muriuki Muriithi, last updated on Jul 12 2023 by Frederick Muriuki Muriithi
- Implementing parallel correlation with rust
✓ issue opened on Apr 25 2022 by Alexander Kabui, last updated on Jul 11 2023 by Alexander_Kabui; 12 of 15 tasks done
- Parsing genotyfiles
issue opened on Jul 11 2023 by Alexander_Kabui
- Linking genotype files to datasets
issue opened on Jul 07 2023 by Alexander_Kabui, last updated on Jul 11 2023 by Alexander_Kabui
- Set password when virtuoso containers are rebuilt
issue opened on Jul 07 2023 by Munyoki Kilyungi
- Info-Files Editing
document created on Jul 07 2023 by Frederick Muriuki Muriithi
- Sparql Examples
document created on Apr 04 2023 by Munyoki Kilyungi, last updated on Jul 07 2023 by Pjotr Prins
- Scheme Macros
document created on Jul 05 2023 by Munyoki Kilyungi
- Letsencrypt
issue opened on Oct 13 2021 by Pjotr Prins, last updated on Jul 04 2023 by Pjotr Prins; 2 of 5 tasks done
- Modifying dump macros
document created on Jul 01 2023 by Munyoki Kilyungi
- LMDB Phenotype/Genotype Store
document created on Jun 22 2023 by Munyoki Kilyungi, last updated on Jun 30 2023 by Alexander_Kabui
- Genenetwork2 Configurations
issue opened on Jun 15 2023 by Frederick Muriuki Muriithi, last updated on Jun 28 2023 by Frederick Muriuki Muriithi
- Genenetwork2 Configurations
issue opened on Jun 14 2023 by Frederick Muriuki Muriithi, last updated on Jun 28 2023 by Frederick Muriuki Muriithi
- issues/fix-genotype-filename-HSNIH-Palmer.gmi
issue opened on Jun 27 2023 by GregFa
- issues/add-pluto-notebooks.gmi
issue opened on Jun 27 2023 by GregFa
- issues/add-bulklmm-feature.gmi
issue opened on Jun 27 2023 by GregFa
- Upload probeset metadata
✓ issue opened on Jun 19 2023 by Munyoki Kilyungi, last updated on Jun 26 2023 by Munyoki Kilyungi
- Dump sample data to LMDB
issue opened on Dec 15 2022 by Munyoki Kilyungi, last updated on Jun 19 2023 by Munyoki Kilyungi; 0 of 5 tasks done
- Add genotype file paths to RDF
issue opened on Jun 19 2023 by Munyoki Kilyungi
- Create Traits Endpoints in RDF
✓ issue opened on May 18 2023 by Munyoki Kilyungi, last updated on Jun 19 2023 by Munyoki Kilyungi; 3 of 3 tasks done
- Mechanical Rob
document created on Aug 23 2022 by Arun Isaac, last updated on Jun 18 2023 by Pjotr Prins
- Branding and front-end-services
issue opened on Jun 14 2023 by Pjotr Prins; 0 of 1 tasks done
- Configurations
issue opened on Jun 05 2023 by Frederick Muriuki Muriithi, last updated on Jun 09 2023 by Frederick Muriuki Muriithi
- Genenetwork3 Effective UID
✓ issue opened on Jun 05 2023 by Frederick Muriuki Muriithi, last updated on Jun 09 2023 by Frederick Muriuki Muriithi
- OAuth2
document created on May 29 2023 by Frederick Muriuki Muriithi, last updated on Jun 07 2023 by Frederick Muriuki Muriithi
- Make xapian index rebuild conditional on database checksums
issue opened on Jun 01 2023 by Arun Isaac; 2 of 3 tasks done
- NGINX Configuration Notes
document created on Jun 01 2023 by Zachary Sloan
- CLI Utility Scripts
document created on May 29 2023 by Frederick Muriuki Muriithi, last updated on May 30 2023 by Frederick Muriuki Muriithi
- Build Registration Page for OAuth2 Clients
✓ issue opened on Dec 22 2022 by Frederick Muriuki Muriithi, last updated on May 30 2023 by Frederick Muriuki Muriithi
- Slow query
issue opened on May 27 2023 by Pjotr Prins, last updated on May 29 2023 by Pjotr Prins; 0 of 2 tasks done
- OpenSMTPD
document created on May 27 2023 by Pjotr Prins
- Make Existing Data Public View by Default
issue opened on May 24 2023 by Frederick Muriuki Muriithi
- Enable User Masquerade
✓ issue opened on May 22 2023 by Frederick Muriuki Muriithi, last updated on May 23 2023 by Frederick Muriuki Muriithi
- Use "Authorisation Code Flow" for Authentication
✓ issue opened on May 08 2023 by Frederick Muriuki Muriithi, last updated on May 22 2023 by Frederick Muriuki Muriithi
- Migrate User Collections
✓ issue opened on May 08 2023 by Frederick Muriuki Muriithi, last updated on May 22 2023 by Frederick Muriuki Muriithi
- Migrate User Accounts from Redis to new Auth DB
✓ issue opened on Dec 22 2022 by Frederick Muriuki Muriithi, last updated on May 22 2023 by Frederick Muriuki Muriithi
- Amazon Web Services
document created on May 15 2023 by AndreaGuarracino, last updated on May 18 2023 by Munyoki Kilyungi
- Give Examples of Fetching GeneRIF Metadata in Sparql
✓ issue opened on Apr 04 2023 by Munyoki Kilyungi, last updated on May 18 2023 by Munyoki Kilyungi
- Document xapian search code architecture
✓ issue opened on Mar 20 2023 by Arun Isaac, last updated on May 05 2023 by Arun Isaac
- Troubleshoot CD Menu Failure
✓ issue opened on Apr 21 2023 by Munyoki Kilyungi, last updated on Apr 26 2023 by Munyoki Kilyungi
- Fallbacks and backups
issue opened on Aug 31 2021 by Pjotr Prins, last updated on Apr 25 2023 by Munyoki Kilyungi; 19 of 24 tasks done
- Restore backup
document created on Feb 07 2023 by Pjotr Prins, last updated on Apr 25 2023 by Munyoki Kilyungi
- Upload GeneWiki RDF metadata to CD
✓ issue opened on Apr 17 2023 by Munyoki Kilyungi, last updated on Apr 18 2023 by Munyoki Kilyungi
- Add GeneRIF page
✓ issue opened on Apr 14 2023 by Munyoki Kilyungi, last updated on Apr 18 2023 by Munyoki Kilyungi
- Add mouse data-set
issue opened on Jun 30 2022 by BonfaceKilz, last updated on Apr 18 2023 by Munyoki Kilyungi; 0 of 4 tasks done
- Remove externally loaded JS
issue opened on Apr 18 2022 by BonfaceKilz, last updated on Apr 18 2023 by Munyoki Kilyungi
- Unable to open new tab for mapping/ correlations with Chrome
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Apr 18 2023 by Munyoki Kilyungi
- Document redis data
✓ issue opened on Nov 27 2021 by BonfaceKilz, last updated on Apr 18 2023 by Munyoki Kilyungi
- Proxy has hard coded URLs
✓ issue opened on Oct 22 2021 by Pjotr Prins, last updated on Apr 18 2023 by Munyoki Kilyungi
- Error when fetching SNPs in a search page
✓ issue opened on Sep 28 2022 by Munyoki Kilyungi, last updated on Apr 18 2023 by Munyoki Kilyungi
- Fix Case Attribute Work (Consecutive CRUD applications)
✓ issue opened on Apr 06 2022 by BonfaceKilz, last updated on Apr 18 2023 by Munyoki Kilyungi; 0 of 2 tasks done
- Uninformative error when batch submitting unknown strains
✓ issue opened on May 05 2022 by BonfaceKilz, last updated on Apr 18 2023 by Munyoki Kilyungi
- Editing traits for BXDs is failing for "%" substitution
✓ issue opened on Nov 09 2022 by Munyoki Kilyungi, last updated on Apr 18 2023 by Munyoki Kilyungi
- Editing Metadata [Improvements to Make]
✓ issue opened on Mar 31 2022 by BonfaceKilz, last updated on Apr 18 2023 by Munyoki Kilyungi; 7 of 11 tasks done
- Editing Case Attribute
✓ issue opened on Mar 16 2023 by Munyoki Kilyungi, last updated on Apr 18 2023 by Munyoki Kilyungi
- Cannot Edit Metadata of BXD Traits Effectively
✓ issue opened on Apr 28 2022 by BonfaceKilz, last updated on Apr 18 2023 by Munyoki Kilyungi; 10 of 12 tasks done
- Dump GeneWiki data
✓ issue opened on Mar 30 2023 by Munyoki Kilyungi, last updated on Apr 17 2023 by Munyoki Kilyungi
- Coupling current_app and db_utils
✓ issue opened on Apr 04 2023 by Frederick Muriuki Muriithi, last updated on Apr 15 2023 by Frederick Muriuki Muriithi
- LMM precomputed scores
issue opened on Mar 16 2023 by Pjotr Prins, last updated on Apr 07 2023 by Pjotr Prins
- Add Cis-Trans plot
issue opened on Apr 07 2023 by Pjotr Prins
- Fix load-rdf.scm script
✓ issue opened on Apr 05 2023 by Munyoki Kilyungi, last updated on Apr 05 2023 by Munyoki Kilyungi
- GeneNetwork SQL Database to RDF
document created on Mar 24 2023 by Pjotr Prins, last updated on Apr 04 2023 by Arun Isaac
- Dump GeneWiki Metadata
✓ issue opened on Mar 16 2023 by Munyoki Kilyungi, last updated on Apr 04 2023 by Munyoki Kilyungi
- Search results presentation
issue opened on Apr 04 2023 by Alexander_Kabui
- Report invalid search queries passed to the search API
issue opened on Feb 15 2023 by Arun Isaac, last updated on Apr 04 2023 by Alexander_Kabui
- Improve presentation of search results
✓ issue opened on Feb 13 2023 by Arun Isaac, last updated on Apr 04 2023 by Alexander_Kabui
- Add search syntax hints to web UI
✓ issue opened on Feb 15 2023 by Arun Isaac, last updated on Apr 04 2023 by Alexander_Kabui
- Enter key in global search field
✓ issue opened on Feb 13 2023 by Arun Isaac, last updated on Apr 04 2023 by Alexander_Kabui
- Document all virtuoso instances
✓ issue opened on Mar 20 2023 by Arun Isaac, last updated on Mar 31 2023 by Arun Isaac
- Use genodb in genenetwork
issue opened on Jul 19 2022 by Arun Isaac, last updated on Mar 31 2023 by Arun Isaac
- Xapian Search Results not Quite as Expected
✓ issue opened on Mar 25 2023 by Frederick Muriuki Muriithi, last updated on Mar 31 2023 by Arun Isaac
- Search queries with quoted author names don't work
issue opened on Mar 28 2023 by Arun Isaac
- Case Attribute Editing Problems
✓ issue opened on May 02 2022 by Zachary Sloan, last updated on Mar 20 2023 by Munyoki Kilyungi
- Databases Getting Out of Wack
issue opened on Mar 03 2022 by jgart, last updated on Mar 16 2023 by Pjotr Prins
- Search for brca
issue opened on Mar 14 2023 by Arun Isaac
- ProbeData
issue opened on Dec 30 2021 by Pjotr Prins, last updated on Mar 14 2023 by Arun Isaac
- Annotation
issue opened on Sep 14 2022 by Pjotr Prins, last updated on Mar 14 2023 by Arun Isaac; 0 of 5 tasks done
- issues/search-hyphen-issue.gmi
issue opened on Feb 24 2022 by Zachary Sloan, last updated on Mar 14 2023 by Arun Isaac
- sample data caching bug
issue opened on Feb 11 2022 by Zachary Sloan, last updated on Mar 14 2023 by Arun Isaac
- issues/adding-traits-from-mapping.gmi
issue opened on Feb 24 2022 by Zachary Sloan, last updated on Mar 14 2023 by Arun Isaac
- issues/add-collection-import.gmi
✓ issue opened on Apr 29 2022 by Zachary Sloan, last updated on Mar 14 2023 by Arun Isaac
- Global search doesn't seem to return phenotype traits
✓ issue opened on Nov 11 2022 by Zachary Sloan, last updated on Mar 14 2023 by Zachary Sloan
- ProbeSetData
issue opened on Dec 31 2021 by Pjotr Prins, last updated on Mar 13 2023 by Pjotr Prins; 15 of 17 tasks done
- slow text search query
issue opened on Mar 12 2023 by Pjotr Prins
- Hanging database
issue opened on Dec 21 2021 by Pjotr Prins, last updated on Mar 11 2023 by Pjotr Prins
- DNS changes
document created on Sep 03 2022 by Pjotr Prins, last updated on Mar 10 2023 by Pjotr Prins
- issues/custom_data_for_scatterplot.gmi
issue opened on Mar 09 2023 by Zachary Sloan
- Some correlations running very slowly
issue opened on Mar 06 2023 by Zachary Sloan, last updated on Mar 07 2023 by Pjotr Prins
- Lisp links
document created on Feb 28 2023 by Pjotr Prins
- BigBlueButton
document created on Mar 05 2022 by jgart, last updated on Feb 28 2023 by Pjotr Prins
- Octopus Maintenance
document created on Feb 13 2023 by Pjotr Prins, last updated on Feb 18 2023 by AndreaGuarracino
- Support searching using SNP names
issue opened on Feb 15 2023 by Arun Isaac
- Default search query in search field
issue opened on Feb 13 2023 by Arun Isaac
- Full text search
✓ issue opened on Jun 30 2022 by Arun Isaac, last updated on Feb 13 2023 by Arun Isaac; 1 of 1 tasks done
- Bug when a user quickly clicks "Compute" for mapping on the trait page
issue opened on Feb 06 2023 by Zachary Sloan, last updated on Feb 13 2023 by Zachary Sloan
- AI Community Symposium at iHub
document created on Jan 26 2023 by Brian Muhia, last updated on Jan 30 2023 by Pjotr Prins
- Pkgconfig
document created on Jan 25 2023 by Pjotr Prins
- CLI Script to Generate Text Files
issue opened on Dec 19 2022 by Frederick Muriuki Muriithi, last updated on Jan 23 2023 by Alexander_Kabui
- Add option to directly link to mapping results
issue opened on Jan 19 2023 by Zachary Sloan
- Running postgres in a Guix container
document created on Jan 17 2023 by Pjotr Prins
- List of proposed changes for PCA traits/figures in Correlation Matrix page
issue opened on Jan 09 2023 by Zachary Sloan
- R/qtl JSONDecodeError
✓ issue opened on Dec 23 2022 by Pjotr Prins, last updated on Dec 24 2022 by Pjotr Prins; 3 of 3 tasks done
- Guix packages
document created on Dec 23 2022 by Pjotr Prins
- metadata caching bug
✓ issue opened on Mar 18 2022 by Alexander Kabui, last updated on Dec 23 2022 by Pjotr Prins; 2 of 2 tasks done
- Using curl
document created on Dec 23 2022 by Pjotr Prins
- GN1 annotation page broken
issue opened on Dec 23 2022 by Pjotr Prins
- GN Services
document created on Sep 15 2021 by Pjotr Prins, last updated on Dec 23 2022 by Pjotr Prins
- Correlation results wrong for certain traits/datasets
issue opened on Dec 12 2022 by Zachary Sloan, last updated on Dec 22 2022 by Zachary Sloan
- Do not conflict with 'random' module
✓ issue opened on Dec 20 2022 by Arun Isaac, last updated on Dec 21 2022 by Frederick Muriuki Muriithi
- Materialised Views for Correlations
✓ issue opened on Oct 19 2022 by Frederick Muriuki Muriithi, last updated on Dec 19 2022 by Frederick Muriuki Muriithi
- GN1 Pairscan
✓ issue opened on Sep 15 2021 by Pjotr Prins, last updated on Dec 17 2022 by Pjotr Prins
- Marker mapping
✓ issue opened on Sep 15 2021 by Pjotr Prins, last updated on Dec 17 2022 by Pjotr Prins
- GN1 github problem
issue opened on Dec 17 2022 by Pjotr Prins
- GN1 annotation page broken
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Dec 17 2022 by Pjotr Prins; 0 of 2 tasks done
- Annotate traits page with metadata from RDF
✓ issue opened on Sep 30 2022 by Munyoki Kilyungi, last updated on Dec 15 2022 by Munyoki Kilyungi; 16 of 16 tasks done
- Add Sample Size to RDF
issue opened on Dec 15 2022 by Munyoki Kilyungi
- Tux02 Production
issue opened on Oct 07 2021 by Pjotr Prins, last updated on Dec 14 2022 by Pjotr Prins; 17 of 22 tasks done
- Add LICENSE page to GN2
issue opened on Dec 12 2022 by Pjotr Prins
- GN1 metadata
issue opened on Dec 09 2022 by Pjotr Prins; 0 of 3 tasks done
- Update production
document created on Dec 07 2022 by Pjotr Prins, last updated on Dec 09 2022 by Pjotr Prins
- issues/sorting-correlation-nan-vals.gmi
issue opened on Nov 28 2022 by AlexanderKabui
- Correlations: Returning Fewer Results
issue opened on Nov 07 2022 by AlexanderKabui, last updated on Nov 25 2022 by Zachary Sloan
- Decouple Tasks in Correlations Results Display
issue opened on Oct 24 2022 by Frederick Muriuki Muriithi, last updated on Nov 25 2022 by Frederick Muriuki Muriithi
- Fix some display issue with the Correlation Results table (plus add column resizing)
✓ issue opened on May 11 2022 by Zachary Sloan, last updated on Nov 22 2022 by Zachary Sloan
- Correlations: Fewer Results than Expected
issue opened on Nov 22 2022 by Frederick Muriuki Muriithi
- Trait Page Errors on CD
issue opened on Nov 22 2022 by Frederick Muriuki Muriithi
- Correlations are not including f1 parents
issue opened on Nov 07 2022 by AlexanderKabui, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Correlations timing out for "UMUTAffy Hippocampus Exon (Feb09) RMA" correlations (and probably some others)
issue opened on Oct 17 2022 by Zachary Sloan, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Remove Extra Partial Correlations Options
✓ issue opened on May 16 2022 by Frederick Muriuki Muriithi, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Correlations time out
✓ issue opened on Aug 06 2021 by Pjotr Prins, last updated on Nov 22 2022 by Frederick Muriuki Muriithi; 2 of 3 tasks done
- Correlations are wrongly always using all samples
✓ issue opened on Oct 21 2022 by Zachary Sloan, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Correlations fail for at least some ProbeSet datasets (as the target dataset)
✓ issue opened on Oct 17 2022 by Zachary Sloan, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Dataset Queried Twice
✓ issue opened on Oct 20 2022 by Frederick Muriuki Muriithi, last updated on Nov 21 2022 by AlexanderKabui
- Data Uploads: Zero Representation
✓ issue opened on Feb 08 2022 by BonfaceKilz, last updated on Nov 11 2022 by Munyoki Kilyungi
- Notify a user after a minor change
✓ issue opened on Nov 09 2022 by Munyoki Kilyungi, last updated on Nov 11 2022 by Munyoki Kilyungi
- Long samplenames overflow in Haplotype Analyst
issue opened on Nov 11 2022 by Zachary Sloan
- User Registration
document created on Nov 02 2022 by Frederick Muriuki Muriithi
- Password Reset
document created on Nov 02 2022 by Frederick Muriuki Muriithi
- Run Correlations in External Process
✓ issue opened on Oct 19 2022 by Frederick Muriuki Muriithi, last updated on Oct 31 2022 by Frederick Muriuki Muriithi
- Errors, defects and missing data in the database
issue opened on Oct 27 2022 by Arun Isaac, last updated on Oct 30 2022 by Arun Isaac
- Orchestration and fallbacks
document created on Sep 02 2022 by Pjotr Prins, last updated on Oct 25 2022 by Pjotr Prins
- Pre-Cache Datasets
issue opened on Oct 24 2022 by Frederick Muriuki Muriithi
- Do Bulk Query for Correlation Results' Display
✓ issue opened on Oct 21 2022 by Frederick Muriuki Muriithi, last updated on Oct 24 2022 by Frederick Muriuki Muriithi
- Replace IPFS
document created on Oct 06 2022 by Pjotr Prins, last updated on Oct 23 2022 by Pjotr Prins
- Debug RISC-V assembly with QEMU and GDB
document created on Oct 19 2022 by Arun Isaac
- Database Migrations
issue opened on Oct 19 2022 by Frederick Muriuki Muriithi
- Developer links for
document created on May 06 2022 by Arun Isaac, last updated on Oct 16 2022 by Pjotr Prins
- Interesting links for coders
document created on Oct 16 2022 by Pjotr Prins
- Global search does not return results
✓ issue opened on Mar 22 2022 by Frederick Muriuki Muriithi, last updated on Oct 14 2022 by Arun Isaac
- Global search does not close connections properly (and is slow)
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 14 2022 by Arun Isaac
- Global search problems
✓ issue opened on Aug 26 2022 by Pjotr Prins, last updated on Oct 14 2022 by Arun Isaac; 1 of 2 tasks done
- Automatically find broken links on GN2
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi; 2 of 2 tasks done
- Search results for SNP looks weird
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi
- Capture Data on the BXDs in RDF
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi
- Better Logging
✓ issue opened on Aug 23 2022 by Munyoki Kilyungi, last updated on Oct 12 2022 by Munyoki Kilyungi
- Handle Configuration Files
issue opened on Dec 03 2021 by BonfaceKilz, last updated on Oct 12 2022 by Munyoki Kilyungi
- Fix Case Attribute Work (Same Columns)
✓ issue opened on Apr 06 2022 by BonfaceKilz, last updated on Oct 12 2022 by Munyoki Kilyungi; 9 of 9 tasks done
- Automated Testing
✓ issue opened on Feb 10 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi; 0 of 10 tasks done
- Using guix-bioinformatics in a channels.scm file
issue opened on Aug 15 2021 by Efraim Flashner, last updated on Oct 09 2022 by Pjotr Prins
- Terminal output to the browser
issue opened on Oct 28 2021 by jgart, last updated on Oct 07 2022 by Arun Isaac
- Rebooting the GN production machine(s)
issue opened on Jan 01 2022 by Pjotr Prins, last updated on Oct 06 2022 by Pjotr Prins; 4 of 4 tasks done
- 'TempDataSet' object has no attribute 'query_for_group' (error)
✓ issue opened on Mar 22 2022 by Frederick Muriuki Muriithi, last updated on Sep 28 2022 by Alexander_Kabui
- Mapping: Haley-Knott Regression: Zooming Bug
✓ issue opened on Sep 22 2022 by Zachary Sloan, last updated on Sep 28 2022 by Alexander_Kabui
- Failing Tests
✓ issue opened on Aug 03 2022 by Frederick Muriuki Muriithi, last updated on Sep 20 2022 by Alexander_Kabui
- Fix Missing Genotype Files for GEMMA
issue opened on Sep 13 2022 by Frederick Muriuki Muriithi, last updated on Sep 20 2022 by Frederick Muriuki Muriithi; 1 of 3 tasks done
- GEMMA should report name of missing genotype file
✓ issue opened on Aug 20 2022 by Arun Isaac, last updated on Sep 19 2022 by Arun Isaac
- Missing Python Module(s) for GeneNetwork3
issue opened on Sep 19 2022 by Frederick Muriuki Muriithi
- Add track for showing which regions in mouse/rat correspond to human regions to the mapping figure
issue opened on Jul 21 2022 by Zachary Sloan, last updated on Sep 14 2022 by Pjotr Prins
- Simplify `dataset.py` in GeneNetwork2
issue opened on Sep 13 2022 by Frederick Muriuki Muriithi
- Markdown docs
issue opened on Sep 10 2022 by Pjotr Prins
- Replace sqlalchemy with MySQLdb
✓ issue opened on Aug 29 2022 by Munyoki Kilyungi, last updated on Sep 08 2022 by Munyoki Kilyungi
- Tests for the genodb genotype database
✓ issue opened on Aug 30 2022 by Arun Isaac, last updated on Sep 05 2022 by Alexander_Kabui
- tux01 running out of RAM
issue opened on Sep 03 2022 by Pjotr Prins, last updated on Sep 05 2022 by Alexander_Kabui; 1 of 6 tasks done
- Second production on tux02
issue opened on Aug 23 2022 by Arun Isaac, last updated on Sep 05 2022 by Alexander_Kabui
- GN2 Time Machines
issue opened on Aug 19 2022 by Pjotr Prins, last updated on Sep 05 2022 by Alexander_Kabui; 4 of 10 tasks done
- MySQLdb._exceptions.OperationalError: (1040, 'Too many connections')
✓ issue opened on Aug 29 2022 by Munyoki Kilyungi, last updated on Sep 05 2022 by Alexander_Kabui; 2 of 2 tasks done
- Genewiki conversion
issue opened on Aug 26 2022 by Pjotr Prins, last updated on Sep 05 2022 by Alexander_Kabui; 0 of 3 tasks done
- topics/systems/migrate-p2.gmi
document created on Sep 02 2022 by Pjotr Prins, last updated on Sep 05 2022 by Alexander_Kabui
- Timeout in CD
✓ issue opened on Jul 22 2022 by Arun Isaac, last updated on Aug 17 2022 by Arun Isaac
- Miscellaneous UI issues
✓ issue opened on Apr 08 2022 by Zachary Sloan, last updated on Aug 08 2022 by Munyoki Kilyungi
- Enable all DataTables to call the same code
issue opened on Jul 26 2022 by Zachary Sloan, last updated on Jul 27 2022 by Zachary Sloan
- Allow analyses to be done between traits from "individuals" groups and their corresponding "main" group
issue opened on Jul 21 2022 by Zachary Sloan
- UI Design
✓ issue opened on Dec 01 2021 by jgart, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
- Quality Control Project
✓ issue opened on Nov 19 2021 by Arthur Centeno, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
- Quality Control Checks
✓ issue opened on Nov 17 2021 by jgart, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
- Gene Symbol Mappings
✓ issue opened on Nov 22 2021 by jgart, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
- Enumerating all QC checks
✓ issue opened on Nov 19 2021 by jgart, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
- Add the option to save traits uploaded with the Submit Trait option
issue opened on Jul 19 2022 by Zachary Sloan
- GeneNetwork Hacking Documentation
document created on Mar 11 2022 by Frederick Muriuki Muriithi, last updated on Jul 18 2022 by Frederick Muriuki Muriithi
- Broken continuous deployment
✓ issue opened on Jul 06 2022 by Arun Isaac, last updated on Jul 11 2022 by Frederick Muriuki Muriithi
- Add convenience templates
✓ issue opened on Oct 28 2021 by jgart, last updated on Jul 11 2022 by Arun Isaac
- Add a transient interface for tissue
✓ issue opened on Mar 28 2022 by BonfaceKilz, last updated on Jul 08 2022 by Arun Isaac
- Slow Correlations and UI crashes
✓ issue opened on Oct 18 2021 by BonfaceKilz, last updated on Jul 08 2022 by Alexander_Kabui
- Gn3 network dependency
issue opened on Mar 18 2022 by Alexander Kabui, last updated on Jul 08 2022 by Alexander_Kabui; 0 of 2 tasks done
- A linter for gnbug
✓ issue opened on Oct 28 2021 by jgart, last updated on Jul 06 2022 by Arun Isaac
- Render images in tissue web output
✓ issue opened on Apr 20 2022 by Arun Isaac, last updated on Jul 06 2022 by Arun Isaac
- Some Historical Context
document created on Jul 05 2022 by BonfaceKilz
- Clean Up
issue opened on Jan 02 2022 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac
- ProbeSetXRef
issue opened on Dec 29 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac
- ProbeSE
issue opened on Dec 30 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac
- Sheepdog
issue opened on Nov 08 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac; 3 of 17 tasks done
- Machine room
issue opened on Nov 23 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac; 1 of 4 tasks done
- GN1 Time machines
issue opened on Oct 07 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac
- Public inbox
issue opened on Jun 29 2022 by Arun Isaac
- Redirect HTTP to HTTPS
✓ issue opened on Jul 31 2021 by Arun Isaac, last updated on Jun 24 2022 by Frederick Muriuki Muriithi
- Improve Menu Generation and Move it to GN3
✓ issue opened on May 16 2022 by Frederick Muriuki Muriithi, last updated on Jun 23 2022 by Frederick Muriuki Muriithi; 2 of 3 tasks done
- Scree Plot appears to be incorrect
issue opened on May 19 2022 by Zachary Sloan, last updated on Jun 15 2022 by BonfaceKilz
- Add "Target" (Y) Column in Partial Correlations Selection Table
✓ issue opened on Apr 22 2022 by Frederick Muriuki Muriithi, last updated on May 26 2022 by Frederick Muriuki Muriithi
- GN3: Technical Debt
✓ issue opened on Feb 08 2022 by BonfaceKilz, last updated on May 25 2022 by BonfaceKilz
- issues/fetch-sample-data.gmi
✓ issue opened on Aug 09 2021 by BonfaceKilz, last updated on May 25 2022 by BonfaceKilz
- Missing CI/CD Definitions for "Service" Daemons
✓ issue opened on May 16 2022 by Frederick Muriuki Muriithi, last updated on May 16 2022 by Frederick Muriuki Muriithi; 1 of 1 tasks done
- Partial Correlation
document created on Oct 15 2021 by Frederick Muriuki Muriithi, last updated on May 16 2022 by Frederick Muriuki Muriithi
- Effect size for GEMMA is a MUST
issue opened on Apr 18 2022 by Rob Williams, last updated on Apr 29 2022 by Arun Isaac
- Make Partial Correlations Table Searchable
issue opened on Apr 22 2022 by Frederick Muriuki Muriithi
- Fix Collection Export
✓ issue opened on Apr 20 2022 by Zachary Sloan, last updated on Apr 21 2022 by Zachary Sloan
- Mapping figure can't be horizontally scrolled
✓ issue opened on Apr 20 2022 by Zachary Sloan, last updated on Apr 21 2022 by Zachary Sloan
- DOL group mapping issues
✓ issue opened on Apr 07 2022 by Zachary Sloan, last updated on Apr 20 2022 by Zachary Sloan
- Add an 'Edit Issue' Link to Tissue
✓ issue opened on Mar 24 2022 by Frederick Muriuki Muriithi, last updated on Apr 15 2022 by Arun Isaac
- Cool Interfaces We Should Emulate
issue opened on Apr 13 2022 by BonfaceKilz, last updated on Apr 14 2022 by BonfaceKilz
- Zoomed mapping result are empty for certain traits
issue opened on Apr 11 2022 by Zachary Sloan, last updated on Apr 13 2022 by Zachary Sloan
- correlation error: 'NoneType' object is not iterable
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Apr 13 2022 by Alexander Kabui
- Wrong CSV in ITP_10001 longevity dataset
✓ issue opened on Apr 11 2022 by BonfaceKilz, last updated on Apr 12 2022 by BonfaceKilz
- Building Guix packages for RISC-V
document created on Apr 08 2022 by Arun Isaac
- BXD102xBXD077F1 Error
✓ issue opened on Mar 22 2022 by Frederick Muriuki Muriithi, last updated on Apr 07 2022 by Zachary Sloan
- Adding principal component to collection returns an error
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Apr 07 2022 by Alexander Kabui
- Remove everything elastic search
✓ issue opened on Oct 22 2021 by Pjotr Prins, last updated on Apr 01 2022 by BonfaceKilz
- topics/data-uploads/inserting-traits.gmi
document created on Mar 30 2022 by Zachary Sloan, last updated on Mar 30 2022 by Zachary Sloan
- Top 10 Things to Test
document created on Mar 28 2022 by BonfaceKilz
- Error when attempt to zoom to a chromosome after mapping a PCA trait
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
- Multi-trait heat map failed
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
- Slow query
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
- Add search, select and export to datatables table
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
- Capture state of phenotypes in a HASH
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
- Fetch trait names for phenotypes
issue opened on Mar 22 2022 by Frederick Muriuki Muriithi
- Variant Browser seems to be using mm9
issue opened on Mar 22 2022 by Frederick Muriuki Muriithi
- csv export meta data are not commented out
issue opened on Mar 22 2022 by Frederick Muriuki Muriithi
- Hide stale issues in gnbug
✓ issue opened on Jan 31 2022 by Arun Isaac, last updated on Mar 22 2022 by Arun Isaac
- Sort gnbug issues most recent first
✓ issue opened on Jan 31 2022 by Arun Isaac, last updated on Mar 22 2022 by Arun Isaac
- Migrate GN1 Clustering
document created on Jul 18 2021 by Pjotr Prins, last updated on Mar 22 2022 by Frederick Muriuki Muriithi
- Remove Elastic Search
✓ issue opened on Oct 28 2021 by BonfaceKilz, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Each shepherd service needs its own guix profile.
issue opened on Nov 03 2021 by Efraim Flashner, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- GN1 symbols
issue opened on Nov 23 2021 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi; 0 of 2 tasks done
- Arthur mentioned last meet that GeneNetwork2 does not redirect http urls to https.
issue opened on Dec 05 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Document API endpoints for GeneNetwork3
issue opened on Mar 04 2022 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Large datasets crash gemma
issue opened on Mar 12 2022 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi; 0 of 7 tasks done
- Guix: Using guix shell with root file
issue opened on Jan 27 2022 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Return canned text if notebook description returns none
issue opened on Oct 28 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- R Kernel Dying
issue opened on Jan 17 2022 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Integrate styling of app with GN2
issue opened on Oct 28 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- When binderlite finds an unkown package in a guix manifest
issue opened on Oct 01 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Add Regular Expression to Prevent Invalid Input
issue opened on Oct 01 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Add configuration to set server name
issue opened on Nov 10 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Shapiro Wilk Test
document created on Nov 24 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Reproducibility
document created on Oct 04 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- CLI Features
document created on Oct 12 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Defining a scheme sexp comment with a reader macro
document created on Feb 02 2022 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Lisp For Schemers
document created on Dec 29 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Common Lisp Condition Handling
document created on Dec 28 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Debugging Lisp
document created on Dec 22 2021 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Common LISP: sly
document created on Jan 29 2022 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Common LISP: Notes
document created on Feb 09 2022 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Non-Clustered and Flippable Heatmaps
document created on Oct 01 2021 by Frederick Muriuki Muriithi, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Ideas and References
document created on Nov 22 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- gemtext cheatsheet
document created on Dec 21 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- GeneNetwork documentation
document created on Nov 16 2021 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Data Uploads: Reversing a Diff
document created on Feb 03 2022 by BonfaceKilz, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Data Uploads: Inserting Data
document created on Jan 27 2022 by BonfaceKilz, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Weechat
document created on Nov 04 2021 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- COVID-19
document created on Nov 14 2021 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Tux01 hard disk crash
issue opened on Sep 29 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- GN1 Slowness
issue opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- GN1 Production
issue opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi; 3 of 8 tasks done
- Fix GN1 Network Graph
issue opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Marker covariates implemented wrong in rqtl_wrapper.R
issue opened on Sep 22 2021 by Zachary Sloan, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- genecup is currently running as root on penguin2.
issue opened on Aug 15 2021 by Efraim Flashner, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Multivariate GEMMA hangs (issue 243)
issue opened on Aug 16 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Make build green
✓ issue opened on Dec 21 2021 by BonfaceKilz, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Medaka Inbred Kiyosu-Karlsruhe (MIKK) Panel
issue opened on Sep 22 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Show Template for when Git URL is not Found
issue opened on Sep 28 2021 by jgart, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- GeneNetwork CLI
document created on Sep 20 2021 by jgart, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Adding Terminal Output
document created on Aug 07 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Add button to delete an entire dataset in gn2
document created on Sep 08 2021 by BonfaceKilz, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Next Steps
document created on Sep 09 2021 by jgart, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- port map
document created on Sep 20 2021 by jgart, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Julia Pluto
document created on Aug 31 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Jupyter notebooks
document created on Sep 01 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Guix Containers
document created on Oct 01 2021 by jgart, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Binding notebooks
document created on Aug 22 2021 by jgart, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- LMM Notes
document created on Aug 13 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- BNW interface for GN2
document created on Oct 18 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- gemma-wrapper has incomplete files
✓ issue opened on Nov 14 2021 by Pjotr Prins, last updated on Feb 17 2022 by Pjotr Prins; 2 of 2 tasks done
- GEMMA GSL ERROR: function value is not finite in brent.c
✓ issue opened on Aug 14 2021 by Pjotr Prins, last updated on Feb 17 2022 by Pjotr Prins
- file upload size limit
✓ issue opened on Feb 16 2022 by jgart, last updated on Feb 16 2022 by jgart
- Designing an issue tracker on gemini
✓ issue opened on Jul 25 2021 by Pjotr Prins, last updated on Feb 02 2022 by Pjotr Prins
- Open notebook directly if full path to notebook file is given
✓ issue opened on Nov 04 2021 by jgart, last updated on Dec 22 2021 by Frederick Muriuki Muriithi
- Nginx forwarding error regarding static assets
✓ issue opened on Nov 10 2021 by jgart, last updated on Dec 22 2021 by Frederick Muriuki Muriithi
- issues/binderlite/add-spinner-for-submit-form.gmi
✓ issue opened on Nov 10 2021 by jgart, last updated on Dec 22 2021 by Frederick Muriuki Muriithi
- Binderlite Notebook Gallery
✓ issue opened on Oct 04 2021 by jgart, last updated on Oct 21 2021 by jgart
- gnbug cat
✓ issue opened on Sep 22 2021 by jgart, last updated on Sep 28 2021 by jgart
- Maybe `gnbug` should be an alias for `gnbug list`
✓ issue opened on Sep 22 2021 by jgart, last updated on Sep 22 2021 by Arun Isaac