This page attempts to document the deployment process we have for GeneNetwork. We use Guix system containers for deployment of CI/CD and the Guix configuration for the CI/CD container should be considered the authoritative reference.
Deployment-specific settings for genenetwork3 should be written to a configuration file and the path to that file should be set in the GN3_CONF environment variable.
Here's a typical configuration file. Please take care to customize it to your specific requirements.
SPARQL_ENDPOINT="http://localhost:9082/sparql" DATA_DIR="/export/data/genenetwork" XAPIAN_DB_PATH="/export/data/genenetwork-xapian"
DATA_DIR must contain two directories???genotype_files and synteny.