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correlation error: 'NoneType' object is not iterable

Tags

  • type: bug
  • priority: high
  • status: closed, completed
  • keywords: correlations, from github, high priority

Description

Dear Developer,

When calculating correlation:

(GeneNetwork error: 'NoneType' object is not iterable)

GeneNetwork tux01:gene:2.11-rc2-production-283af77a7 http://www.genenetwork.org/corr_compute ( 2:39PM UTC Feb 19, 2020)
'NoneType' object is not iterable (error)
  File "/export/local/home/gn2/production/gene/wqflask/wqflask/correlation/show_corr_results.py", line 473, in process_samples
    for sample in sample_names:

notes

codebase for gn2 correlation had a rewrite and this is no longer an issue


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