Trouble shoot rqlt2 in GN2 (improve comptutations), dump genotypes (HS, Kilifish) to LMDB, reverse genotyping progress

assigned: alex, flisso
status: active
extended parties: ai-lab team, Zach

Descriptions

We want to improve the computation of rqtl2 in GN, add relevant features for mapping experiments; on the other hand, dump current genotypes (HS and Kilifish) into LMDB, then assess how the representation in LMDB makes sense. This is an extension of the current work around genotyping Hand in hand, implement reverse genotyping on bxd data, compare the number of peaks identified before and after

Actionables:

[] - Complete test run for reverse genotyping for the 13k traits (@flisso, assist @alex to make more sense of the genotype data structure and the biology behind it)
[] - Dump HS, Kilifish genotypes into LMDB (collaborative effort: @alex and @flisso, combining the biological input and the engineering design to it; both parties learn, GN2 thrives)
[] - Trouble shoot rqtl2, improve it for GN2 (@alex as lead; collaborate with @flisso to add relevant mapping features for visualizatio and ease of interpretability)