- Decommission machines
issue opened on Oct 06 2021 by Pjotr Prins, last updated 30 hours ago by Pjotr Prins; 11 of 22 tasks done
- Fix Failing MR Failing Tests
issue opened 11 days ago by Munyoki Kilyungi, last updated 11 days ago by Munyoki Kilyungi
- Move Search to Xapian
issue opened 2 weeks ago by Munyoki Kilyungi
- Migrate to Python3.10
issue opened on Jul 12 2023 by Frederick Muriuki Muriithi, last updated 2 weeks ago by Munyoki Kilyungi; 0 of 1 tasks done
- Invalid Token Error
✓ issue opened 4 weeks ago by Zachary Sloan, last updated 3 weeks ago by Frederick Muriuki Muriithi
- Fix Broken UTF-8 characters in our Database
✓ issue opened on Nov 29 2022 by Munyoki Kilyungi, last updated 4 weeks ago by Munyoki Kilyungi
- MariaDB: Move to InnoDB Engine
issue opened on Dec 28 2021 by Pjotr Prins, last updated 6 weeks ago by Munyoki Kilyungi; 0 of 6 tasks done
- Temp traits don't seem to be handled by the authorization system
issue opened 8 weeks ago by Zachary Sloan, last updated 8 weeks ago by Frederick Muriuki Muriithi
- Brittle Fix for Editing Metadata
issue opened 8 weeks ago by Frederick Muriuki Muriithi
- Bug with linking data
issue opened 8 weeks ago by Zachary Sloan
- rewrite sampledata fetching with genofiles using scheme
issue opened on Jul 19 2023 by Alexander_Kabui, last updated on Jul 26 2023 by Alexander_Kabui; 2 of 6 tasks done
- Delete Rejected Diffs from Database
✓ issue opened on Jul 25 2023 by Frederick Muriuki Muriithi, last updated on Jul 25 2023 by Frederick Muriuki Muriithi
- Show "Edit" Button for All Users
✓ issue opened on Jul 24 2023 by Frederick Muriuki Muriithi, last updated on Jul 24 2023 by Frederick Muriuki Muriithi
- Fetch trait data using genofiles
issue opened on Jul 11 2023 by Alexander_Kabui, last updated on Jul 13 2023 by Alexander_Kabui; 2 of 3 tasks done
- Parsing genotyfiles
issue opened on Jul 11 2023 by Alexander_Kabui
- Linking genotype files to datasets
issue opened on Jul 07 2023 by Alexander_Kabui, last updated on Jul 11 2023 by Alexander_Kabui
- Improve sparql results
issue opened on Jul 07 2023 by Munyoki Kilyungi
- Autogenerate documentation: trees, and labels
issue opened on Jun 23 2023 by Munyoki Kilyungi, last updated on Jul 05 2023 by Munyoki Kilyungi
- issues/fix-genotype-filename-HSNIH-Palmer.gmi
issue opened on Jun 27 2023 by GregFa
- issues/add-pluto-notebooks.gmi
issue opened on Jun 27 2023 by GregFa
- issues/add-bulklmm-feature.gmi
issue opened on Jun 27 2023 by GregFa
- Dump sample data to LMDB
issue opened on Dec 15 2022 by Munyoki Kilyungi, last updated on Jun 19 2023 by Munyoki Kilyungi; 0 of 5 tasks done
- Branding and front-end-services
issue opened on Jun 14 2023 by Pjotr Prins; 0 of 1 tasks done
- Build Registration Page for OAuth2 Clients
✓ issue opened on Dec 22 2022 by Frederick Muriuki Muriithi, last updated on May 30 2023 by Frederick Muriuki Muriithi
- Migrate User Accounts from Redis to new Auth DB
✓ issue opened on Dec 22 2022 by Frederick Muriuki Muriithi, last updated on May 22 2023 by Frederick Muriuki Muriithi
- Incorrect PubMed IDs in the Publication Table
issue opened on May 09 2023 by Munyoki Kilyungi
- Broken Indexing
issue opened on May 03 2023 by Munyoki Kilyungi
- Model Menu In RDF
issue opened on Apr 18 2023 by Munyoki Kilyungi, last updated on Apr 27 2023 by Munyoki Kilyungi
- Error when fetching SNPs in a search page
✓ issue opened on Sep 28 2022 by Munyoki Kilyungi, last updated on Apr 18 2023 by Munyoki Kilyungi
- Editing traits for BXDs is failing for "%" substitution
✓ issue opened on Nov 09 2022 by Munyoki Kilyungi, last updated on Apr 18 2023 by Munyoki Kilyungi
- Editing Metadata [Improvements to Make]
✓ issue opened on Mar 31 2022 by BonfaceKilz, last updated on Apr 18 2023 by Munyoki Kilyungi; 7 of 11 tasks done
- Cannot Edit Metadata of BXD Traits Effectively
✓ issue opened on Apr 28 2022 by BonfaceKilz, last updated on Apr 18 2023 by Munyoki Kilyungi; 10 of 12 tasks done
- Dump GeneWiki data
✓ issue opened on Mar 30 2023 by Munyoki Kilyungi, last updated on Apr 17 2023 by Munyoki Kilyungi
- Coupling current_app and db_utils
✓ issue opened on Apr 04 2023 by Frederick Muriuki Muriithi, last updated on Apr 15 2023 by Frederick Muriuki Muriithi
- LMM precomputed scores
issue opened on Mar 16 2023 by Pjotr Prins, last updated on Apr 07 2023 by Pjotr Prins
- Case Attribute Editing Problems
✓ issue opened on May 02 2022 by Zachary Sloan, last updated on Mar 20 2023 by Munyoki Kilyungi
- Databases Getting Out of Wack
issue opened on Mar 03 2022 by jgart, last updated on Mar 16 2023 by Pjotr Prins
- Global search doesn't seem to return phenotype traits
✓ issue opened on Nov 11 2022 by Zachary Sloan, last updated on Mar 14 2023 by Zachary Sloan
- Hanging database
issue opened on Dec 21 2021 by Pjotr Prins, last updated on Mar 11 2023 by Pjotr Prins
- issues/custom_data_for_scatterplot.gmi
issue opened on Mar 09 2023 by Zachary Sloan
- Some correlations running very slowly
issue opened on Mar 06 2023 by Zachary Sloan, last updated on Mar 07 2023 by Pjotr Prins
- Octopus sysmaintenance
✓ issue opened on Oct 12 2021 by Pjotr Prins, last updated on Feb 22 2023 by Pjotr Prins; 5 of 5 tasks done
- Bug when a user quickly clicks "Compute" for mapping on the trait page
issue opened on Feb 06 2023 by Zachary Sloan, last updated on Feb 13 2023 by Zachary Sloan
- CLI Script to Generate Text Files
issue opened on Dec 19 2022 by Frederick Muriuki Muriithi, last updated on Jan 23 2023 by Alexander_Kabui
- Big File Upload Fails
issue opened on Jan 17 2023 by Frederick Muriuki Muriithi
- GN1 annotation page broken
issue opened on Dec 23 2022 by Pjotr Prins
- Correlation results wrong for certain traits/datasets
issue opened on Dec 12 2022 by Zachary Sloan, last updated on Dec 22 2022 by Zachary Sloan
- Materialised Views for Correlations
✓ issue opened on Oct 19 2022 by Frederick Muriuki Muriithi, last updated on Dec 19 2022 by Frederick Muriuki Muriithi
- Marker mapping
✓ issue opened on Sep 15 2021 by Pjotr Prins, last updated on Dec 17 2022 by Pjotr Prins
- GN1 annotation page broken
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Dec 17 2022 by Pjotr Prins; 0 of 2 tasks done
- Annotate traits page with metadata from RDF
✓ issue opened on Sep 30 2022 by Munyoki Kilyungi, last updated on Dec 15 2022 by Munyoki Kilyungi; 16 of 16 tasks done
- Add Sample Size to RDF
issue opened on Dec 15 2022 by Munyoki Kilyungi
- GN1 metadata
issue opened on Dec 09 2022 by Pjotr Prins; 0 of 3 tasks done
- Correlations: Returning Fewer Results
issue opened on Nov 07 2022 by AlexanderKabui, last updated on Nov 25 2022 by Zachary Sloan
- Trait Page Errors on CD
issue opened on Nov 22 2022 by Frederick Muriuki Muriithi
- Correlations are not including f1 parents
issue opened on Nov 07 2022 by AlexanderKabui, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Correlations timing out for "UMUTAffy Hippocampus Exon (Feb09) RMA" correlations (and probably some others)
issue opened on Oct 17 2022 by Zachary Sloan, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Remove Extra Partial Correlations Options
✓ issue opened on May 16 2022 by Frederick Muriuki Muriithi, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Phenotype Correlation Error
✓ issue opened on Sep 28 2022 by Zachary Sloan, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Correlations are wrongly always using all samples
✓ issue opened on Oct 21 2022 by Zachary Sloan, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Correlations fail for at least some ProbeSet datasets (as the target dataset)
✓ issue opened on Oct 17 2022 by Zachary Sloan, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Data Uploads: Zero Representation
✓ issue opened on Feb 08 2022 by BonfaceKilz, last updated on Nov 11 2022 by Munyoki Kilyungi
- Run Correlations in External Process
✓ issue opened on Oct 19 2022 by Frederick Muriuki Muriithi, last updated on Oct 31 2022 by Frederick Muriuki Muriithi
- Do Bulk Query for Correlation Results' Display
✓ issue opened on Oct 21 2022 by Frederick Muriuki Muriithi, last updated on Oct 24 2022 by Frederick Muriuki Muriithi
- Genotype correlations only returning results from first chromosome
issue opened on Oct 21 2022 by Zachary Sloan
- Database Migrations
issue opened on Oct 19 2022 by Frederick Muriuki Muriithi
- Capture Data on the BXDs in RDF
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi
- 'TempDataSet' object has no attribute 'query_for_group' (error)
✓ issue opened on Mar 22 2022 by Frederick Muriuki Muriithi, last updated on Sep 28 2022 by Alexander_Kabui
- Missing Python Module(s) for GeneNetwork3
issue opened on Sep 19 2022 by Frederick Muriuki Muriithi
- Rewrite qc and qc-uploads in Python3
issue opened on Apr 11 2022 by Frederick Muriuki Muriithi, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
- Quality Control Project
✓ issue opened on Nov 19 2021 by Arthur Centeno, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
- Quality Control Checks
✓ issue opened on Nov 17 2021 by jgart, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
- Enumerating all QC checks
✓ issue opened on Nov 19 2021 by jgart, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
- Machine room
issue opened on Nov 23 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac; 1 of 4 tasks done
- GN1 Time machines
issue opened on Oct 07 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac
- Fix Collection Export
✓ issue opened on Apr 20 2022 by Zachary Sloan, last updated on Apr 21 2022 by Zachary Sloan
- Zoomed mapping result are empty for certain traits
issue opened on Apr 11 2022 by Zachary Sloan, last updated on Apr 13 2022 by Zachary Sloan
- correlation error: 'NoneType' object is not iterable
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Apr 13 2022 by Alexander Kabui
- Adding principal component to collection returns an error
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Apr 07 2022 by Alexander Kabui
- Error when attempt to zoom to a chromosome after mapping a PCA trait
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
- Slow query
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
- csv export meta data are not commented out
issue opened on Mar 22 2022 by Frederick Muriuki Muriithi
- Each shepherd service needs its own guix profile.
issue opened on Nov 03 2021 by Efraim Flashner, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Large datasets crash gemma
issue opened on Mar 12 2022 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi; 0 of 7 tasks done
- Return canned text if notebook description returns none
issue opened on Oct 28 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- R Kernel Dying
issue opened on Jan 17 2022 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- When binderlite finds an unkown package in a guix manifest
issue opened on Oct 01 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Add Regular Expression to Prevent Invalid Input
issue opened on Oct 01 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Add configuration to set server name
issue opened on Nov 10 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- GN1 Slowness
issue opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Fix GN1 Network Graph
issue opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- genecup is currently running as root on penguin2.
issue opened on Aug 15 2021 by Efraim Flashner, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Multivariate GEMMA hangs (issue 243)
issue opened on Aug 16 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi