Trying to run the CTL Maps feature in the collections page as described in
We get an error in the results page of the form:
{'error': '{\'code\': 1, \'output\': \'Loading required package: MASS\\nLoading required package: parallel\\nLoading required package: qtl\\nThere were 13 warnings (use warnings() to see them)\\nError in xspline(x, y, shape = 0, lwd = lwd, border = col, lty = lty, : \\n invalid value specified for graphical parameter "lwd"\\nCalls: ctl.lineplot -> draw.spline -> xspline\\nExecution halted\\n\'}'}
on the CLI the same error is rendered:
Loading required package: MASS Loading required package: parallel Loading required package: qtl There were 13 warnings (use warnings() to see them) Error in xspline(x, y, shape = 0, lwd = lwd, border = col, lty = lty, : invalid value specified for graphical parameter "lwd" Calls: ctl.lineplot -> draw.spline -> xspline Execution halted
On my local development machine, the command run was
Rscript /home/frederick/genenetwork/genenetwork3/scripts/ctl_analysis.R /tmp/01828928-26e6-4cad-bbc8-59fd7a7977de.json
Here is a zipped version of the json file (follow the link and click download):
Troubleshooting a while, I suspect
indicates that our call above might be okay, which might mean something changed in the dependencies that the ctl library used.