• [X] API: Get WIKI/RIF by symbol from rdf.

GET /wiki/<symbol>

[{
    "symbol": "XXXX",
    "reason": "XXXX",
    "species": "XXXX",
    "pubmed_ids": ["XXXX", "XXXX"], // empty array when non-existent
    "web_url": "XXXX" // Optional
    "comment": "XXXX",
    "email": "XXXX",
    "categories": ["XXXX", "XXXX"], // Enumeration
    "version": "XXXX",
    "initial": "XXXX", // Optional user or project code or your initials.
}]

• [X] UI: Modify traits page to have "GN2 (GeneWiki)"
• [X] UI: Integrate with API

• [X] API: Edit comment by id in mysql/rdf: modifies GeneRIF and GeneRIFXRef tables.
• [X] API: Modify edit comments by id to include RDF changes.

POST /wiki/<comment-id>/edit

{
    "symbol": "XXXX",
    "reason": "XXXX",
    "species": "XXXX",
    "pubmed_ids": ["XXXX", "XXXX"], // Optional
    "web_url": "XXXX" // Optional
    "comment": "XXXX",
    "email": "XXXX",
    "categories": ["XXXX", "XXXX"], // Enumeration
    "initial": "XXXX", // Optional user or project code or your initials.
}

• [X] UI: Add buttons that edit various relevant sections.
• [X] UI: Edit page needs to fetch categories from GeneCategory table. When comment write fails, alert with error. When comment write success, update the comment on the page, and alert with success.
• [X] API: Modify edit comments by id to include RDF changes.
• [X] GN auth integration

• [X] API: End-point to fetch all the historical data
• [X] UI: Page that contains history for how comments changes.

GET /wiki/<comment-id>/history

[{
    "symbol": "XXXX",
    "reason": "XXXX",
    "species": "XXXX",
    "pubmed_ids": ["XXXX", "XXXX"], // Optional
    "web_url": "XXXX" // Optional
    "comment": "XXXX",
    "email": "XXXX",
    "categories": ["XXXX", "XXXX"], // Enumeration
    "version": "XXXX",
    "initial": "XXXX", // Optional user or project code or your initials.
}]

• [X] Review performance of query used in 72d9a24e8e65 [Genenetwork3]

• [X] RDF synchronization with SQL (gn-machines).
• [X] Update RDF in tux02.
• [X] UI: Add "edit" button after testing.

Genenetwork2:

• UI/fetch rif using recent apis #858
• Add comment history page. #864
• Add support for auth in Rif Edit #865
• Add a page for searching GeneWiki by symbol. #866
• Add display page for NCBI RIF metadata. #881
• Add display page for NCBI RIF metadata. #881
• GN editting UI improvements #882

GeneNetwork3:

• Update script that updates Generif_BASIC table #180
• Add case insensitive prefixes for rif wiki #181
• Api/get wiki from rdf #184
• feat: add api calls to get categories and last comment #185
• Api/fetch the latest wiki by versionid #186
• Api/get end point to fetch all historical data #187
• Add auth to edit RIF api call #189
• Api/update rif queries #190
• Api/edit rif endpoint #193
• Fix C0411/C0412 pylint errors in gn3.api.metadata.api.wiki. #194
• Add rif tests #195
• Handle missing GN3_SECRETS for CI testing. #196
• Rif edit atomicity #197
• Run tests against Virtuoso that is spun locally. #198
• Add rdf-tests after the check phase. #199
• Api/ncbi metadata #200

• closed