See this
Given an s-expression say:
(define-dump dump-species
(tables (Species))
(schema-triples
(gn:name rdfs:range rdfs:Literal)
(gn:displayName rdfs:range rdfs:Literal)
(gn:binomialName rdfs:range rdfs:Literal)
(gn:family rdfs:range rdfs:Literal))
(triples (string->identifier "species" (field Species FullName))
(set rdf:type 'gn:species)
(set gn:name (field Species SpeciesName))
(set gn:displayName (field Species MenuName))
(set gn:binomialName (field Species FullName))
(set gn:family (field Species Family))
(set gn:organism (ontology 'ncbiTaxon: (field Species TaxonomyId)))))
... parse the s-expression into markdown into a form that looks like this:
# dump-species
## Metadata for predicates used in defining dump-species
gn:name -> rdfs:range -> rdfs:Literal
gn:display -> rdfs:range -> rdfs:Literal
gn:binomialName -> rdf:range -> rdfs:Literal
gn:family -> rdfs:range -> rdfs:Literal
## Triples inside the dump-species
An example of an identifer that would be used as a subject is: gn:species_mus_musculus
gn:species_mus_musculus -> rdf:type -> gn:species
gn:species_mus_musculus -> gn:name -> Species.SpeciesName
gn:species_mus_musculus -> gn:displayName -> Species.MenuName
gn:species_mus_musculus -> gn:binomialName -> Species.FullName
gn:species_mus_musculus -> gn:family -> Species.Family
gn:species_mus_musculus -> gn:organism -> Species.TaxonomyId
Example query to fetch all metadata about a species:
: SELECT ?p ?o WHERE { gn:species_mus_musculus ?p ?o } LIMIT 1
Some current challenges I'm facing: in the case of "blank-nodes", how do I autogenerate the docs?