We need to update Virtuoso in production. At the moment this is done manually. For the current set-up, we need to update the recent modified RIF+WIKI models:
# Generate the RDF triples
time guix shell guile-dbi guile-hashing -m manifest.scm -- ./pre-inst-env ./examples/generif.scm --settings conf.scm --output /home/bonfacem/ttl-files/generif-metadata-new.ttl --documentation ./docs/generif-metadata.md
# Make sure they are valid
guix shell -m manifest.scm -- rapper --input turtle --count /home/bonfacem/ttl-files/generif-metadata-new.ttl
# Copy the files over to the exposed virtuoso path
cp /home/bonfacem/ttl-files/generif-metadata-new.ttl </some/dir/>
# Get into Virtuoso (with a password)
guix shell virtuoso-ose -- isql <port-number>
# Load the files to be loaded
# Assuming that '/var/lib/data' is where the files are
ld_dir('/var/lib/data', 'generif-metadata-new.ttl', 'http://genenetwork.org');
# Load the files
rdf_loader_run();
CHECKPOINT;
Above steps should be automated and tested in CD before roll-out in production. Key considerations:
- Pick latest important changes from git, so that we can pick what files to run instead of generating all the ttl files all the time.