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rewrite sampledata fetching with genofiles using scheme


  • assigned: alexm,
  • type: improvement
  • priority: high
  • status: in progress


having identified ways to link genofiles to Dataset and fetching sample data and case attributes using them we need to integrate the components intoa fully working module This is in turn be used to dump data to lmdb We chose scheme to accomplish the task See code:


  • [x] reading the genofile
  • [x] parsing the genofile to obtain the sample names,metadata
  • [] adding unit tests for the module
  • [] query statements fetch sampledata and caseattributes
  • [] add tests
  • [] lmdb dump
(made with skribilo)