Here we will track introducing a new precomputation of scores for GN. Interestingly, this ties in with our xapian search and fast querying of value ranges.

• assigned: pjotrp
• priority: high
• type: bug, enhancement
• status: unclear
• keywords: database, gemma, reaper

The old reaper scores are in

MariaDB [db_webqtl]> select ProbeSetId,ProbeSetFreezeId,Locus,LRS,additive from ProbeSetXRef limit 10;
+------------+------------------+----------------+------------------+--------------------+
| ProbeSetId | ProbeSetFreezeId | Locus          | LRS              | additive           |
+------------+------------------+----------------+------------------+--------------------+
|          1 |                1 | rs13480619     |  12.590069931048 |        -0.28515625 |
|          2 |                1 | rs29535974     | 10.5970737900941 | -0.116783333333333 |
|          3 |                1 | rs49742109     |  6.0970532702754 |  0.112957489878542 |
|          4 |                1 | rsm10000002321 | 11.7748675511731 | -0.157113725490196 |
|          5 |                1 | rsm10000019445 | 10.9232633740162 |  0.114764705882353 |
|          6 |                1 | rsm10000017255 | 8.45741703245224 | -0.200034412955466 |
|          7 |                1 | rs4178505      | 7.46477918183565 |  0.104331983805668 |
|          8 |                1 | rsm10000144086 | 12.1201771258006 | -0.134278431372548 |
|          9 |                1 | rsm10000014965 | 11.8837168740735 |  0.341458333333334 |
|         10 |                1 | rsm10000020208 | 10.2809848009836 | -0.173866666666667 |
+------------+------------------+----------------+------------------+--------------------+
10 rows in set (0.000 sec)

This means for every dataset one single maximum score gets stored (?)

Moved to

• ../../topics/systems/mariadb/precompute-mapping-input-data.gmi

• closed