- Set-up Virtuoso+Xapian on Production
✓ issue opened on Nov 22 2023 by Munyoki Kilyungi, last updated 5 weeks ago by Frederick Muriuki Muriithi; 1 of 1 tasks done
- Fix Xapian search bug
✓ issue opened on Jun 07 2024 by Zachary Sloan, last updated 7 weeks ago by Zachary Sloan
- Edit RIF Metadata in GN2
✓ issue opened on Jul 29 2024 by Munyoki Kilyungi, last updated 7 weeks ago by Munyoki Kilyungi; 15 of 15 tasks done
- GEMMA output differs from R/qtl2
✓ issue opened on Aug 01 2024 by Pjotr Prins, last updated on Sep 20 2024 by Pjotr Prins
- gn-uploader container: Running wrong genenetwork2
✓ issue opened on Mar 18 2024 by Frederick Muriuki Muriithi, last updated on Sep 16 2024 by Frederick Muriuki Muriithi
- Global Search: Unhandled Error
✓ issue opened on Mar 04 2024 by Frederick Muriuki Muriithi, last updated on Sep 16 2024 by Frederick Muriuki Muriithi
- Error Handling: External Errors
✓ issue opened on Jan 29 2024 by Frederick Muriuki Muriithi, last updated on Sep 16 2024 by Frederick Muriuki Muriithi
- Haley-Knott Regression Mapping Error
✓ issue opened on Sep 11 2024 by Frederick Muriuki Muriithi
- Integrating gn-auth with gn-llm
✓ issue opened on Jan 10 2024 by Alexander_Kabui, last updated on Sep 09 2024 by Alexander_Kabui
- Move Search to Xapian
✓ issue opened on Sep 08 2023 by Munyoki Kilyungi, last updated on Jul 29 2024 by Munyoki Kilyungi
- Add Documentation For Set Up and Data Retrieval For AI Repo
✓ issue opened on Dec 01 2023 by Munyoki Kilyungi, last updated on Jul 29 2024 by Munyoki Kilyungi
- Move Uploader to tux02
✓ issue opened on Mar 12 2024 by Frederick Muriuki Muriithi, last updated on Jul 03 2024 by Frederick Muriuki Muriithi; 3 of 3 tasks done
- Check Genotypes in the Database for R/qtl2 Uploads
✓ issue opened on Jun 26 2024 by Frederick Muriuki Muriithi, last updated on Jul 01 2024 by Frederick Muriuki Muriithi
- Implement "Refresh Token" Feature for JWTs
✓ issue opened on Apr 26 2024 by Frederick Muriuki Muriithi, last updated on Jun 26 2024 by Frederick Muriuki Muriithi
- genecup is currently running as root on penguin2.
✓ issue opened on Aug 15 2021 by Efraim Flashner, last updated on Jun 21 2024 by Pjotr Prins
- Sort by Attributes
✓ issue opened on May 31 2024 by Frederick Muriuki Muriithi, last updated on May 31 2024 by Zachary Sloan
- Bug when using HTMX Ajax Post request
✓ issue opened on May 14 2024 by Alexander_Kabui, last updated on May 28 2024 by Alexander_Kabui
- Edit OAuth2 Clients
✓ issue opened on Apr 24 2024 by Frederick Muriuki Muriithi, last updated on May 02 2024 by Frederick Muriuki Muriithi
- Move GN Dataset to Git
✓ issue opened on Feb 08 2024 by Munyoki Kilyungi, last updated on Apr 30 2024 by Munyoki Kilyungi; 4 of 4 tasks done
- Handle Invalid Login Errors Correctly
✓ issue opened on Apr 24 2024 by Frederick Muriuki Muriithi, last updated on Apr 26 2024 by Frederick Muriuki Muriithi
- Fix Opaque Errors
✓ issue opened on Feb 12 2024 by Frederick Muriuki Muriithi, last updated on Feb 27 2024 by Frederick Muriuki Muriithi
- Upload Strains
✓ issue opened on Dec 06 2023 by Frederick Muriuki Muriithi, last updated on Feb 27 2024 by Frederick Muriuki Muriithi; 5 of 5 tasks done
- Temp traits don't seem to be handled by the authorization system
✓ issue opened on Jul 28 2023 by Zachary Sloan, last updated on Feb 27 2024 by Frederick Muriuki Muriithi
- Improve Logging in GN3 RDF endpoints
✓ issue opened on Feb 10 2024 by Munyoki Kilyungi, last updated on Feb 14 2024 by Munyoki Kilyungi
- GN3 Setup on tux01 - Non-Deterministic Behavior
✓ issue opened on Jan 15 2024 by Munyoki Kilyungi, last updated on Feb 10 2024 by Munyoki Kilyungi
- Add HTML Page for Genotypes
✓ issue opened on Jan 09 2024 by Munyoki Kilyungi, last updated on Jan 10 2024 by Munyoki Kilyungi
- Add HTML Page for ProbeSet Page
✓ issue opened on Dec 14 2023 by Munyoki Kilyungi, last updated on Jan 09 2024 by Munyoki Kilyungi
- GN3 API Configurations on CD
✓ issue opened on Jan 08 2024 by Alexander_Kabui, last updated on Jan 08 2024 by Alexander_Kabui
- Troubleshoot https://luna.genenetwork.org/ai/ asking questions
✓ issue opened on Jan 04 2024 by Munyoki Kilyungi, last updated on Jan 04 2024 by Munyoki Kilyungi
- Add GeneList to Metadata
✓ issue opened on Dec 13 2023 by Munyoki Kilyungi, last updated on Dec 20 2023 by Munyoki Kilyungi
- Trait Page Errors on CD
✓ issue opened on Nov 22 2022 by Frederick Muriuki Muriithi, last updated on Dec 18 2023 by Frederick Muriuki Muriithi
- Handling Resource Links in ProbeSet Page
✓ issue opened on Nov 22 2023 by Munyoki Kilyungi, last updated on Dec 14 2023 by Munyoki Kilyungi
- Minor Phenotype Page UI updates
✓ issue opened on Nov 30 2023 by Munyoki Kilyungi, last updated on Dec 01 2023 by Munyoki Kilyungi; 6 of 6 tasks done
- Genotype correlations only returning results from first chromosome
✓ issue opened on Oct 21 2022 by Zachary Sloan, last updated on Nov 29 2023 by Zachary Sloan
- Big File Upload Fails
✓ issue opened on Jan 17 2023 by Frederick Muriuki Muriithi, last updated on Nov 28 2023 by Frederick Muriuki Muriithi
- Rewrite qc and qc-uploads in Python3
✓ issue opened on Apr 11 2022 by Frederick Muriuki Muriithi, last updated on Nov 28 2023 by Frederick Muriuki Muriithi
- Phenotype Correlation Error
✓ issue opened on Sep 28 2022 by Zachary Sloan, last updated on Nov 28 2023 by Frederick Muriuki Muriithi
- Fix Failing MR Failing Tests
✓ issue opened on Sep 13 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Migrate to Python3.10
✓ issue opened on Jul 12 2023 by Frederick Muriuki Muriithi, last updated on Oct 11 2023 by Munyoki Kilyungi; 0 of 1 tasks done
- Model Menu In RDF
✓ issue opened on Apr 18 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Incorrect PubMed IDs in the Publication Table
✓ issue opened on May 09 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Improve sparql results
✓ issue opened on Jul 07 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Autogenerate documentation: trees, and labels
✓ issue opened on Jun 23 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Broken Indexing
✓ issue opened on May 03 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Invalid Token Error
✓ issue opened on Aug 25 2023 by Zachary Sloan, last updated on Aug 31 2023 by Frederick Muriuki Muriithi
- Fix Broken UTF-8 characters in our Database
✓ issue opened on Nov 29 2022 by Munyoki Kilyungi, last updated on Aug 29 2023 by Munyoki Kilyungi
- Delete Rejected Diffs from Database
✓ issue opened on Jul 25 2023 by Frederick Muriuki Muriithi, last updated on Jul 25 2023 by Frederick Muriuki Muriithi
- Show "Edit" Button for All Users
✓ issue opened on Jul 24 2023 by Frederick Muriuki Muriithi, last updated on Jul 24 2023 by Frederick Muriuki Muriithi
- Build Registration Page for OAuth2 Clients
✓ issue opened on Dec 22 2022 by Frederick Muriuki Muriithi, last updated on May 30 2023 by Frederick Muriuki Muriithi
- Migrate User Accounts from Redis to new Auth DB
✓ issue opened on Dec 22 2022 by Frederick Muriuki Muriithi, last updated on May 22 2023 by Frederick Muriuki Muriithi
- Error when fetching SNPs in a search page
✓ issue opened on Sep 28 2022 by Munyoki Kilyungi, last updated on Apr 18 2023 by Munyoki Kilyungi
- Editing traits for BXDs is failing for "%" substitution
✓ issue opened on Nov 09 2022 by Munyoki Kilyungi, last updated on Apr 18 2023 by Munyoki Kilyungi
- Editing Metadata [Improvements to Make]
✓ issue opened on Mar 31 2022 by BonfaceKilz, last updated on Apr 18 2023 by Munyoki Kilyungi; 7 of 11 tasks done
- Cannot Edit Metadata of BXD Traits Effectively
✓ issue opened on Apr 28 2022 by BonfaceKilz, last updated on Apr 18 2023 by Munyoki Kilyungi; 10 of 12 tasks done
- Dump GeneWiki data
✓ issue opened on Mar 30 2023 by Munyoki Kilyungi, last updated on Apr 17 2023 by Munyoki Kilyungi
- Coupling current_app and db_utils
✓ issue opened on Apr 04 2023 by Frederick Muriuki Muriithi, last updated on Apr 15 2023 by Frederick Muriuki Muriithi
- Case Attribute Editing Problems
✓ issue opened on May 02 2022 by Zachary Sloan, last updated on Mar 20 2023 by Munyoki Kilyungi
- Global search doesn't seem to return phenotype traits
✓ issue opened on Nov 11 2022 by Zachary Sloan, last updated on Mar 14 2023 by Zachary Sloan
- Materialised Views for Correlations
✓ issue opened on Oct 19 2022 by Frederick Muriuki Muriithi, last updated on Dec 19 2022 by Frederick Muriuki Muriithi
- Marker mapping
✓ issue opened on Sep 15 2021 by Pjotr Prins, last updated on Dec 17 2022 by Pjotr Prins
- Annotate traits page with metadata from RDF
✓ issue opened on Sep 30 2022 by Munyoki Kilyungi, last updated on Dec 15 2022 by Munyoki Kilyungi; 16 of 16 tasks done
- Remove Extra Partial Correlations Options
✓ issue opened on May 16 2022 by Frederick Muriuki Muriithi, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Correlations are wrongly always using all samples
✓ issue opened on Oct 21 2022 by Zachary Sloan, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Correlations fail for at least some ProbeSet datasets (as the target dataset)
✓ issue opened on Oct 17 2022 by Zachary Sloan, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Data Uploads: Zero Representation
✓ issue opened on Feb 08 2022 by BonfaceKilz, last updated on Nov 11 2022 by Munyoki Kilyungi
- Run Correlations in External Process
✓ issue opened on Oct 19 2022 by Frederick Muriuki Muriithi, last updated on Oct 31 2022 by Frederick Muriuki Muriithi
- Do Bulk Query for Correlation Results' Display
✓ issue opened on Oct 21 2022 by Frederick Muriuki Muriithi, last updated on Oct 24 2022 by Frederick Muriuki Muriithi
- Capture Data on the BXDs in RDF
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi
- 'TempDataSet' object has no attribute 'query_for_group' (error)
✓ issue opened on Mar 22 2022 by Frederick Muriuki Muriithi, last updated on Sep 28 2022 by Alexander_Kabui
- Quality Control Project
✓ issue opened on Nov 19 2021 by Arthur Centeno, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
- Quality Control Checks
✓ issue opened on Nov 17 2021 by jgart, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
- Enumerating all QC checks
✓ issue opened on Nov 19 2021 by jgart, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
- Fix Collection Export
✓ issue opened on Apr 20 2022 by Zachary Sloan, last updated on Apr 21 2022 by Zachary Sloan
- correlation error: 'NoneType' object is not iterable
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Apr 13 2022 by Alexander Kabui