- Upload Strains
issue opened 5 days ago by Frederick Muriuki Muriithi, last updated 5 days ago by Frederick Muriuki Muriithi; 0 of 5 tasks done
- Add Documentation For Set Up and Data Retrieval For AI Repo
issue opened 10 days ago by Munyoki Kilyungi
- Rework Resources
issue opened on Sep 06 2023 by Frederick Muriuki Muriithi, last updated 13 days ago by Frederick Muriuki Muriithi; 2 of 3 tasks done
- Handling Resource Links in ProbeSet Page
issue opened 3 weeks ago by Munyoki Kilyungi
- Set-up Virtuoso on Production
issue opened 3 weeks ago by Munyoki Kilyungi
- Export Uploaded Data to LMDB and RDF Stores
issue opened 5 weeks ago by Frederick Muriuki Muriithi, last updated 4 weeks ago by Frederick Muriuki Muriithi; 0 of 6 tasks done
- Gn Markdown Editor implementation
issue opened 5 weeks ago by Alexander_Kabui; 4 of 5 tasks done
- Octopus sysmaintenance
issue opened on Oct 12 2021 by Pjotr Prins, last updated 6 weeks ago by Pjotr Prins; 0 of 8 tasks done
- Rework Test: Remove redis as Test Dependency
issue opened 6 weeks ago by Frederick Muriuki Muriithi
- UI Frontend for RDF
issue opened on Oct 11 2023 by Munyoki Kilyungi, last updated 7 weeks ago by Munyoki Kilyungi
- Bug with linking data
issue opened on Jul 26 2023 by Zachary Sloan, last updated 8 weeks ago by Frederick Muriuki Muriithi
- Decommission machines
issue opened on Oct 06 2021 by Pjotr Prins, last updated on Sep 22 2023 by Pjotr Prins; 11 of 22 tasks done
- Gn Markdown Editor implementation
issue opened on Aug 07 2023 by Alexander_Kabui, last updated on Sep 11 2023 by Alexander_Kabui; 4 of 5 tasks done
- Move Search to Xapian
issue opened on Sep 08 2023 by Munyoki Kilyungi
- MariaDB: Move to InnoDB Engine
issue opened on Dec 28 2021 by Pjotr Prins, last updated on Aug 11 2023 by Munyoki Kilyungi; 0 of 6 tasks done
- CI rethink
issue opened on Jun 23 2023 by Arun Isaac, last updated on Aug 09 2023 by Arun Isaac; 4 of 8 tasks done
- Temporary Traits Access Concerns
issue opened on Aug 03 2023 by Frederick Muriuki Muriithi
- Temp traits don't seem to be handled by the authorization system
issue opened on Jul 28 2023 by Zachary Sloan, last updated on Aug 02 2023 by Frederick Muriuki Muriithi
- Brittle Fix for Editing Metadata
issue opened on Aug 02 2023 by Frederick Muriuki Muriithi
- Paginate Resources Page
issue opened on Jul 27 2023 by Frederick Muriuki Muriithi
- UI issues/improvements
issue opened on Jul 26 2023 by Zachary Sloan
- Search is case sensitive
issue opened on Jul 26 2023 by Arun Isaac
- rewrite sampledata fetching with genofiles using scheme
issue opened on Jul 19 2023 by Alexander_Kabui, last updated on Jul 26 2023 by Alexander_Kabui; 2 of 6 tasks done
- Show Last Edited
issue opened on Jul 24 2023 by Frederick Muriuki Muriithi
- genenetwork2 CD sometimes fails to restart
issue opened on Mar 17 2023 by Arun Isaac, last updated on Jul 14 2023 by Munyoki Kilyungi
- Fetch trait data using genofiles
issue opened on Jul 11 2023 by Alexander_Kabui, last updated on Jul 13 2023 by Alexander_Kabui; 2 of 3 tasks done
- Parsing genotyfiles
issue opened on Jul 11 2023 by Alexander_Kabui
- Linking genotype files to datasets
issue opened on Jul 07 2023 by Alexander_Kabui, last updated on Jul 11 2023 by Alexander_Kabui
- Set password when virtuoso containers are rebuilt
issue opened on Jul 07 2023 by Munyoki Kilyungi
- Letsencrypt
issue opened on Oct 13 2021 by Pjotr Prins, last updated on Jul 04 2023 by Pjotr Prins; 2 of 5 tasks done
- Genenetwork2 Configurations
issue opened on Jun 15 2023 by Frederick Muriuki Muriithi, last updated on Jun 28 2023 by Frederick Muriuki Muriithi
- Genenetwork2 Configurations
issue opened on Jun 14 2023 by Frederick Muriuki Muriithi, last updated on Jun 28 2023 by Frederick Muriuki Muriithi
- issues/fix-genotype-filename-HSNIH-Palmer.gmi
issue opened on Jun 27 2023 by GregFa
- issues/add-pluto-notebooks.gmi
issue opened on Jun 27 2023 by GregFa
- issues/add-bulklmm-feature.gmi
issue opened on Jun 27 2023 by GregFa
- Dump sample data to LMDB
issue opened on Dec 15 2022 by Munyoki Kilyungi, last updated on Jun 19 2023 by Munyoki Kilyungi; 0 of 5 tasks done
- Add genotype file paths to RDF
issue opened on Jun 19 2023 by Munyoki Kilyungi
- Branding and front-end-services
issue opened on Jun 14 2023 by Pjotr Prins; 0 of 1 tasks done
- Configurations
issue opened on Jun 05 2023 by Frederick Muriuki Muriithi, last updated on Jun 09 2023 by Frederick Muriuki Muriithi
- Make xapian index rebuild conditional on database checksums
issue opened on Jun 01 2023 by Arun Isaac; 2 of 3 tasks done
- Slow query
issue opened on May 27 2023 by Pjotr Prins, last updated on May 29 2023 by Pjotr Prins; 0 of 2 tasks done
- Make Existing Data Public View by Default
issue opened on May 24 2023 by Frederick Muriuki Muriithi
- Fallbacks and backups
issue opened on Aug 31 2021 by Pjotr Prins, last updated on Apr 25 2023 by Munyoki Kilyungi; 19 of 24 tasks done
- Add mouse data-set
issue opened on Jun 30 2022 by BonfaceKilz, last updated on Apr 18 2023 by Munyoki Kilyungi; 0 of 4 tasks done
- Remove externally loaded JS
issue opened on Apr 18 2022 by BonfaceKilz, last updated on Apr 18 2023 by Munyoki Kilyungi
- LMM precomputed scores
issue opened on Mar 16 2023 by Pjotr Prins, last updated on Apr 07 2023 by Pjotr Prins
- Add Cis-Trans plot
issue opened on Apr 07 2023 by Pjotr Prins
- Search results presentation
issue opened on Apr 04 2023 by Alexander_Kabui
- Report invalid search queries passed to the search API
issue opened on Feb 15 2023 by Arun Isaac, last updated on Apr 04 2023 by Alexander_Kabui
- Use genodb in genenetwork
issue opened on Jul 19 2022 by Arun Isaac, last updated on Mar 31 2023 by Arun Isaac
- Search queries with quoted author names don't work
issue opened on Mar 28 2023 by Arun Isaac
- Databases Getting Out of Wack
issue opened on Mar 03 2022 by jgart, last updated on Mar 16 2023 by Pjotr Prins
- Search for brca
issue opened on Mar 14 2023 by Arun Isaac
- ProbeData
issue opened on Dec 30 2021 by Pjotr Prins, last updated on Mar 14 2023 by Arun Isaac
- Annotation
issue opened on Sep 14 2022 by Pjotr Prins, last updated on Mar 14 2023 by Arun Isaac; 0 of 5 tasks done
- issues/search-hyphen-issue.gmi
issue opened on Feb 24 2022 by Zachary Sloan, last updated on Mar 14 2023 by Arun Isaac
- sample data caching bug
issue opened on Feb 11 2022 by Zachary Sloan, last updated on Mar 14 2023 by Arun Isaac
- issues/adding-traits-from-mapping.gmi
issue opened on Feb 24 2022 by Zachary Sloan, last updated on Mar 14 2023 by Arun Isaac
- ProbeSetData
issue opened on Dec 31 2021 by Pjotr Prins, last updated on Mar 13 2023 by Pjotr Prins; 15 of 17 tasks done
- slow text search query
issue opened on Mar 12 2023 by Pjotr Prins
- Hanging database
issue opened on Dec 21 2021 by Pjotr Prins, last updated on Mar 11 2023 by Pjotr Prins
- issues/custom_data_for_scatterplot.gmi
issue opened on Mar 09 2023 by Zachary Sloan
- Some correlations running very slowly
issue opened on Mar 06 2023 by Zachary Sloan, last updated on Mar 07 2023 by Pjotr Prins
- Support searching using SNP names
issue opened on Feb 15 2023 by Arun Isaac
- Default search query in search field
issue opened on Feb 13 2023 by Arun Isaac
- Bug when a user quickly clicks "Compute" for mapping on the trait page
issue opened on Feb 06 2023 by Zachary Sloan, last updated on Feb 13 2023 by Zachary Sloan
- CLI Script to Generate Text Files
issue opened on Dec 19 2022 by Frederick Muriuki Muriithi, last updated on Jan 23 2023 by Alexander_Kabui
- Add option to directly link to mapping results
issue opened on Jan 19 2023 by Zachary Sloan
- List of proposed changes for PCA traits/figures in Correlation Matrix page
issue opened on Jan 09 2023 by Zachary Sloan
- GN1 annotation page broken
issue opened on Dec 23 2022 by Pjotr Prins
- Correlation results wrong for certain traits/datasets
issue opened on Dec 12 2022 by Zachary Sloan, last updated on Dec 22 2022 by Zachary Sloan
- GN1 github problem
issue opened on Dec 17 2022 by Pjotr Prins
- GN1 annotation page broken
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Dec 17 2022 by Pjotr Prins; 0 of 2 tasks done
- Add Sample Size to RDF
issue opened on Dec 15 2022 by Munyoki Kilyungi
- Tux02 Production
issue opened on Oct 07 2021 by Pjotr Prins, last updated on Dec 14 2022 by Pjotr Prins; 17 of 22 tasks done
- Add LICENSE page to GN2
issue opened on Dec 12 2022 by Pjotr Prins
- GN1 metadata
issue opened on Dec 09 2022 by Pjotr Prins; 0 of 3 tasks done
- issues/sorting-correlation-nan-vals.gmi
issue opened on Nov 28 2022 by AlexanderKabui
- Correlations: Returning Fewer Results
issue opened on Nov 07 2022 by AlexanderKabui, last updated on Nov 25 2022 by Zachary Sloan
- Decouple Tasks in Correlations Results Display
issue opened on Oct 24 2022 by Frederick Muriuki Muriithi, last updated on Nov 25 2022 by Frederick Muriuki Muriithi
- Correlations: Fewer Results than Expected
issue opened on Nov 22 2022 by Frederick Muriuki Muriithi
- Trait Page Errors on CD
issue opened on Nov 22 2022 by Frederick Muriuki Muriithi
- Correlations are not including f1 parents
issue opened on Nov 07 2022 by AlexanderKabui, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Correlations timing out for "UMUTAffy Hippocampus Exon (Feb09) RMA" correlations (and probably some others)
issue opened on Oct 17 2022 by Zachary Sloan, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Long samplenames overflow in Haplotype Analyst
issue opened on Nov 11 2022 by Zachary Sloan
- Errors, defects and missing data in the database
issue opened on Oct 27 2022 by Arun Isaac, last updated on Oct 30 2022 by Arun Isaac
- Pre-Cache Datasets
issue opened on Oct 24 2022 by Frederick Muriuki Muriithi
- Database Migrations
issue opened on Oct 19 2022 by Frederick Muriuki Muriithi
- Search results for SNP looks weird
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi
- Handle Configuration Files
issue opened on Dec 03 2021 by BonfaceKilz, last updated on Oct 12 2022 by Munyoki Kilyungi
- Using guix-bioinformatics in a channels.scm file
issue opened on Aug 15 2021 by Efraim Flashner, last updated on Oct 09 2022 by Pjotr Prins
- Terminal output to the browser
issue opened on Oct 28 2021 by jgart, last updated on Oct 07 2022 by Arun Isaac
- Rebooting the GN production machine(s)
issue opened on Jan 01 2022 by Pjotr Prins, last updated on Oct 06 2022 by Pjotr Prins; 4 of 4 tasks done
- Fix Missing Genotype Files for GEMMA
issue opened on Sep 13 2022 by Frederick Muriuki Muriithi, last updated on Sep 20 2022 by Frederick Muriuki Muriithi; 1 of 3 tasks done
- Missing Python Module(s) for GeneNetwork3
issue opened on Sep 19 2022 by Frederick Muriuki Muriithi
- Add track for showing which regions in mouse/rat correspond to human regions to the mapping figure
issue opened on Jul 21 2022 by Zachary Sloan, last updated on Sep 14 2022 by Pjotr Prins
- Simplify `dataset.py` in GeneNetwork2
issue opened on Sep 13 2022 by Frederick Muriuki Muriithi
- Markdown docs
issue opened on Sep 10 2022 by Pjotr Prins
- tux01 running out of RAM
issue opened on Sep 03 2022 by Pjotr Prins, last updated on Sep 05 2022 by Alexander_Kabui; 1 of 6 tasks done
- Second production on tux02
issue opened on Aug 23 2022 by Arun Isaac, last updated on Sep 05 2022 by Alexander_Kabui
- GN2 Time Machines
issue opened on Aug 19 2022 by Pjotr Prins, last updated on Sep 05 2022 by Alexander_Kabui; 4 of 10 tasks done
- Genewiki conversion
issue opened on Aug 26 2022 by Pjotr Prins, last updated on Sep 05 2022 by Alexander_Kabui; 0 of 3 tasks done
- Enable all DataTables to call the same code
issue opened on Jul 26 2022 by Zachary Sloan, last updated on Jul 27 2022 by Zachary Sloan
- Allow analyses to be done between traits from "individuals" groups and their corresponding "main" group
issue opened on Jul 21 2022 by Zachary Sloan
- Add the option to save traits uploaded with the Submit Trait option
issue opened on Jul 19 2022 by Zachary Sloan
- Gn3 network dependency
issue opened on Mar 18 2022 by Alexander Kabui, last updated on Jul 08 2022 by Alexander_Kabui; 0 of 2 tasks done
- Clean Up
issue opened on Jan 02 2022 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac
- ProbeSetXRef
issue opened on Dec 29 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac
- ProbeSE
issue opened on Dec 30 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac
- Sheepdog
issue opened on Nov 08 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac; 3 of 17 tasks done
- Machine room
issue opened on Nov 23 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac; 1 of 4 tasks done
- GN1 Time machines
issue opened on Oct 07 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac
- Public inbox
issue opened on Jun 29 2022 by Arun Isaac
- Scree Plot appears to be incorrect
issue opened on May 19 2022 by Zachary Sloan, last updated on Jun 15 2022 by BonfaceKilz
- Effect size for GEMMA is a MUST
issue opened on Apr 18 2022 by Rob Williams, last updated on Apr 29 2022 by Arun Isaac
- Make Partial Correlations Table Searchable
issue opened on Apr 22 2022 by Frederick Muriuki Muriithi
- Cool Interfaces We Should Emulate
issue opened on Apr 13 2022 by BonfaceKilz, last updated on Apr 14 2022 by BonfaceKilz
- Zoomed mapping result are empty for certain traits
issue opened on Apr 11 2022 by Zachary Sloan, last updated on Apr 13 2022 by Zachary Sloan
- Adding principal component to collection returns an error
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Apr 07 2022 by Alexander Kabui
- Error when attempt to zoom to a chromosome after mapping a PCA trait
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
- Multi-trait heat map failed
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
- Slow query
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
- Add search, select and export to datatables table
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
- Capture state of phenotypes in a HASH
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
- Fetch trait names for phenotypes
issue opened on Mar 22 2022 by Frederick Muriuki Muriithi
- Variant Browser seems to be using mm9
issue opened on Mar 22 2022 by Frederick Muriuki Muriithi
- csv export meta data are not commented out
issue opened on Mar 22 2022 by Frederick Muriuki Muriithi
- Each shepherd service needs its own guix profile.
issue opened on Nov 03 2021 by Efraim Flashner, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- GN1 symbols
issue opened on Nov 23 2021 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi; 0 of 2 tasks done
- Arthur mentioned last meet that GeneNetwork2 does not redirect http urls to https.
issue opened on Dec 05 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Document API endpoints for GeneNetwork3
issue opened on Mar 04 2022 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Large datasets crash gemma
issue opened on Mar 12 2022 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi; 0 of 7 tasks done
- Guix: Using guix shell with root file
issue opened on Jan 27 2022 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Return canned text if notebook description returns none
issue opened on Oct 28 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- R Kernel Dying
issue opened on Jan 17 2022 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Integrate styling of app with GN2
issue opened on Oct 28 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- When binderlite finds an unkown package in a guix manifest
issue opened on Oct 01 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Add Regular Expression to Prevent Invalid Input
issue opened on Oct 01 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Add configuration to set server name
issue opened on Nov 10 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Tux01 hard disk crash
issue opened on Sep 29 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- GN1 Slowness
issue opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- GN1 Production
issue opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi; 3 of 8 tasks done
- Fix GN1 Network Graph
issue opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Marker covariates implemented wrong in rqtl_wrapper.R
issue opened on Sep 22 2021 by Zachary Sloan, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- genecup is currently running as root on penguin2.
issue opened on Aug 15 2021 by Efraim Flashner, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Multivariate GEMMA hangs (issue 243)
issue opened on Aug 16 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Medaka Inbred Kiyosu-Karlsruhe (MIKK) Panel
issue opened on Sep 22 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Show Template for when Git URL is not Found
issue opened on Sep 28 2021 by jgart, last updated on Mar 14 2022 by Frederick Muriuki Muriithi