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Variant Browser seems to be using mm9 variant browser mm9 from github stalled bug unclear
opened on Mar 22 2022 by Frederick Muriuki Muriithi
Use genodb in genenetwork
opened 3 weeks ago by Arun Isaac
Uninformative error when batch submitting unknown strains medium unclear metatadata
opened on May 05 2022 by BonfaceKilz
Unable to open new tab for mapping/ correlations with Chrome mapping correlation google chrome ui from github medium unclear bug
opened on Mar 23 2022 by Frederick Muriuki Muriithi
Timeout in CD cd
opened 3 weeks ago by Arun Isaac
Tests for the genodb genotype database
opened 5 weeks ago by Arun Isaac
Tux02 Production systems tux02 production system administration medium in progress
opened on Oct 07 2021 by Pjotr Prins, last updated 6 weeks ago by Arun Isaac; 14 of 22 tasks done
Tux01 hard disk crash system tux01 hard disk crash in progress medium
opened on Sep 29 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
Sheepdog system sheepdog medium in progress halted enhancement
opened on Nov 08 2021 by Pjotr Prins, last updated 6 weeks ago by Arun Isaac; 3 of 17 tasks done
Rebooting the GN production machine(s)systems tux01 tux02 production system administration medium unclear
opened on Jan 01 2022 by Pjotr Prins, last updated 6 weeks ago by Arun Isaac; 4 of 5 tasks done
MariaDB: Move to InnoDB Engine database mariadb innodb medium unclear enhancement documentation
opened on Dec 28 2021 by Pjotr Prins, last updated 6 weeks ago by Arun Isaac; 0 of 2 tasks done
Clean Up database mariadb database administration unclear
opened on Jan 02 2022 by Pjotr Prins, last updated 6 weeks ago by Arun Isaac
ProbeSetXRef medium unclear enhancement documentation probesetxref database mariadb innodb
opened on Dec 29 2021 by Pjotr Prins, last updated 6 weeks ago by Arun Isaac
ProbeSetData database mariadb innodb enhancement medium unclear
opened on Dec 31 2021 by Pjotr Prins, last updated 6 weeks ago by Arun Isaac; 6 of 13 tasks done
ProbeSE database mariadb innodb probese enhancement medium unclear
opened on Dec 30 2021 by Pjotr Prins, last updated 6 weeks ago by Arun Isaac
ProbeData database mariadb innodb probedata enhancement medium unclear
opened on Dec 30 2021 by Pjotr Prins, last updated 6 weeks ago by Arun Isaac
Machine room unclear systems high system administration
opened on Nov 23 2021 by Pjotr Prins, last updated 6 weeks ago by Arun Isaac; 1 of 4 tasks done
GN1 Time machines systems system administration unclear high
opened on Oct 07 2021 by Pjotr Prins, last updated 6 weeks ago by Arun Isaac
Fallbacks and backups critical in progress systems fallback backup deploy enhancement
opened on Aug 31 2021 by Pjotr Prins, last updated 6 weeks ago by Arun Isaac; 19 of 24 tasks done
Decommission machines unclear system administration systems high
opened on Oct 06 2021 by Pjotr Prins, last updated 6 weeks ago by Arun Isaac; 11 of 16 tasks done
CI/ CD for genetwork projects enhancement high in progress deployment ci cd testing
opened on Jan 13 2022 by BonfaceKilz, last updated 6 weeks ago by Arun Isaac
Slow query slow query from github stalled high
opened on Mar 23 2022 by Frederick Muriuki Muriithi
Search results for SNP looks weird ui snp from github in progress medium bug
opened on Mar 23 2022 by Frederick Muriuki Muriithi
Resurrect Mechanical Rob medium enhancement in progress testing ci cd mechanical rob
opened on Mar 04 2022 by Arun Isaac, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
Gn3 network dependency medium stalled bug network_connections ctl wgcna
opened on Mar 18 2022 by Alexander Kabui, last updated 5 weeks ago by Alexander_Kabui
Remove Extra Partial Correlations Options high bug in progress partial correlations
opened on May 16 2022 by Frederick Muriuki Muriithi, last updated 7 weeks ago by Frederick Muriuki Muriithi
Remove externally loaded JS guix medium unclear ui enhancement
opened on Apr 18 2022 by BonfaceKilz, last updated 37 hours ago by Alexander_Kabui
Document redis data documentation data redis unclear high bug
opened on Nov 27 2021 by BonfaceKilz, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
Rewrite qc and qc-uploads in Python3 quality control in progress high rewrite
opened on Apr 11 2022 by Frederick Muriuki Muriithi, last updated 3 weeks ago by Frederick Muriuki Muriithi
Public inbox
opened 6 weeks ago by Arun Isaac
Each shepherd service needs its own guix profile.shepherd system administration high unclear bug
opened on Nov 03 2021 by Efraim Flashner, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
Multi-trait heat map failed heatmap from github stalled medium bug
opened on Mar 23 2022 by Frederick Muriuki Muriithi
Editing Metadata [Improvements to Make]metadata phenotypes in progress medium ui
opened on Mar 31 2022 by BonfaceKilz, last updated 37 hours ago by Munyoki Kilyungi; 7 of 11 tasks done
Zoomed mapping result are empty for certain traits high in progress bug mapping user interface display failure
opened on Apr 11 2022 by Zachary Sloan, last updated on Apr 13 2022 by Zachary Sloan
Make Partial Correlations Table Searchable partial correlations datatables pending migration feature-request medium
opened on Apr 22 2022 by Frederick Muriuki Muriithi
Integrate Feed Analyser twitter feed analyser from github medium in progress feature-request
opened on Mar 23 2022 by Frederick Muriuki Muriithi
Implementing parallel correlation with rust correlation rust parralel in progress medium upgrade
opened on Apr 25 2022 by Alexander Kabui, last updated 38 hours ago by Alexander_Kabui; 7 of 11 tasks done
GN1 annotation page broken gn1 genenetwork1 annotation from github bug overdue high
opened on Mar 23 2022 by Frederick Muriuki Muriithi
Global search does not return results global search from github unclear bug critical
opened on Mar 22 2022 by Frederick Muriuki Muriithi
Global search does not close connections properly (and is slow)global search db connections medium priority from github stalled medium bug
opened on Mar 23 2022 by Frederick Muriuki Muriithi
Enable all DataTables to call the same code tables javascript open in progress refactor medium
opened 2 weeks ago by Zachary Sloan, last updated 13 days ago by Zachary Sloan
GN1 symbols gn1 symbols unclear medium bug
opened on Nov 23 2021 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi; 0 of 2 tasks done
GN1 Slowness gn1 high bug
opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
GN1 Production in progress gn1 critical bug
opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi; 3 of 8 tasks done
GN1 Pairscan unclear missing dependency binary blob gn1 critical bug
opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
Fix GN1 Network Graph in progress gn1 network graph high bug
opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
Marker mapping marker unclear high bug
opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
Proxy has hard coded URLs proxy configuration settings unclear medium bug
opened on Oct 22 2021 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
Marker covariates implemented wrong in rqtl_wrapper.R medium marker covariates in progress halted bug
opened on Sep 22 2021 by Zachary Sloan, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
404 error in logs low unclear deployment 404 enhancement
opened on Sep 22 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
Arthur mentioned last meet that GeneNetwork2 does not redirect http urls to https.gn2 http https unclear medium bug
opened on Dec 05 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
Global search problems global search brca2 bug critical unclear
opened on Nov 16 2021 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi; 0 of 2 tasks done
Genewiki conversion gn1 documentation unclear medium enhancement
opened on Nov 16 2021 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
Need Guix packages guix packages environments medium unclear bug
opened on Mar 12 2022 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
Document API endpoints for GeneNetwork3 gn3 documentation
opened on Mar 04 2022 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
genecup is currently running as root on penguin2.high unclear genecup penguin2 failure
opened on Aug 15 2021 by Efraim Flashner, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
Multivariate GEMMA hangs (issue 243)high unclear gemma failure
opened on Aug 16 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
Databases Getting Out of Wack database gemma reaper unclear bug high
opened on Mar 03 2022 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
Large datasets crash gemma gemma crash high bug unclear
opened on Mar 12 2022 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi; 0 of 7 tasks done
Full text search
opened 6 weeks ago by Arun Isaac
Scree Plot appears to be incorrect correlations pca scree-plot in-progress medium bug
opened on May 19 2022 by Zachary Sloan, last updated 8 weeks ago by BonfaceKilz
Fix some display issue with the Correlation Results table (plus add column resizing)correlation datatables javascript in progress bug feature-enhancement medium
opened on May 11 2022 by Zachary Sloan
Fetch trait names for phenotypes phenotype from github feature-request enhancement unclear pending
opened on Mar 22 2022 by Frederick Muriuki Muriithi
Failing Tests genenetwork2 tests failure open critical bug
opened 7 days ago by Frederick Muriuki Muriithi, last updated 33 hours ago by Alexander_Kabui
Error when attempt to zoom to a chromosome after mapping a PCA trait pca from github high priority unclear high bug
opened on Mar 23 2022 by Frederick Muriuki Muriithi
Allow analyses to be done between traits from "individuals" groups and their corresponding "main" group data meta-data open in progress feature-request medium
opened 3 weeks ago by Zachary Sloan
Effect size for GEMMA is a MUST
opened on Apr 18 2022 by Rob Williams, last updated on Apr 29 2022 by Arun Isaac
Cannot Edit Metadata of BXD Traits Effectively high in progress metatadata
opened on Apr 28 2022 by BonfaceKilz, last updated on May 26 2022 by BonfaceKilz
Handle Configuration Files gn2 configuration deploy in progress medium bug
opened on Dec 03 2021 by BonfaceKilz, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
Hanging database high unclear database bug
opened on Dec 21 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
Medaka Inbred Kiyosu-Karlsruhe (MIKK) Panel medaka mikk unclear data
opened on Sep 22 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
Add the option to save traits uploaded with the Submit Trait option data meta-data open in progress feature-request medium
opened 3 weeks ago by Zachary Sloan
csv export meta data are not commented out csv from github meta data unclear bug high
opened on Mar 22 2022 by Frederick Muriuki Muriithi
Create a new UI language for gn2 low unclear ui
opened on Apr 18 2022 by BonfaceKilz
Correlations time out critical in progress bug correlations time out
opened on Aug 06 2021 by Pjotr Prins, last updated on Apr 11 2022 by Pjotr Prins; 2 of 3 tasks done
Cool Interfaces We Should Emulate low stalled ui
opened on Apr 13 2022 by BonfaceKilz, last updated on Apr 14 2022 by BonfaceKilz
Fix Case Attribute Work (Consecutive CRUD applications)case attributes data editing bug in progress
opened on Apr 06 2022 by BonfaceKilz, last updated on Apr 15 2022 by BonfaceKilz; 0 of 2 tasks done
Case Attribute Editing Problems high in progress bug metadata case-attributes
opened on May 02 2022 by Zachary Sloan, last updated on May 02 2022 by Zachary Sloan
Capture state of phenotypes in a HASH phenotypes rest ui medium in progress enhancement feature-request
opened on Mar 23 2022 by Frederick Muriuki Muriithi
Capture Data on the BXDs in RDF rdf bxd rest from github high priority feature-request enhancement unclear high
opened on Mar 23 2022 by Frederick Muriuki Muriithi
Using guix-bioinformatics in a channels.scm file medium unclear guix-bioinformatics bug
opened on Aug 15 2021 by Efraim Flashner, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
Buggy Use of `urllib.parse.urljoin`url pending low bug
opened 2 weeks ago by Frederick Muriuki Muriithi
Guix: Using guix shell with root file guix guix shell root file low unclear
opened on Jan 27 2022 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
Show Template for when Git URL is not Found binderlite template medium bug
opened on Sep 28 2021 by jgart, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
Return canned text if notebook description returns none binderlite notebooks in progress high bug
opened on Oct 28 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
R Kernel Dying r unclear high bug
opened on Jan 17 2022 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
Integrate styling of app with GN2 binderlite notebooks styling ui medium bug ongoing in progress
opened on Oct 28 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
When binderlite finds an unkown package in a guix manifest high binderlite notebooks unclear bug
opened on Oct 01 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
Terminal output to the browser binderlite notebooks ansi2html medium feature-request ongoing in progress
opened on Oct 28 2021 by jgart, last updated 5 weeks ago by Arun Isaac
Add Regular Expression to Prevent Invalid Input high binderlite notebooks unclear bug
opened on Oct 01 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
Add configuration to set server name binderlite notebooks configuration high unclear feature-request
opened on Nov 10 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
Automated Testing testing ci cd enhancement medium in progress
opened on Feb 10 2022 by Frederick Muriuki Muriithi, last updated 3 weeks ago by Arun Isaac; 0 of 10 tasks done
Clean up Authorisation medium in progress stalled authorisation
opened on Nov 19 2021 by BonfaceKilz, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
Adding principal component to collection returns an error collections from github bug high unclear
opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Apr 07 2022 by Alexander Kabui
Add search, select and export to datatables table datatables ui low priority unclear feature-request low
opened on Mar 23 2022 by Frederick Muriuki Muriithi
Add mouse data-set in progress high
opened 6 weeks ago by BonfaceKilz, last updated 6 weeks ago by BonfaceKilz
Add track for showing which regions in mouse/rat correspond to human regions to the mapping figure mapping open in progress feature-request medium
opened 3 weeks ago by Zachary Sloan, last updated 41 hours ago by Zachary Sloan
'TempDataSet' object has no attribute 'query_for_group' (error)tempdataset from github unclear bug high
opened on Mar 22 2022 by Frederick Muriuki Muriithi, last updated 7 weeks ago by BonfaceKilz