- Hanging database
issue opened on Dec 21 2021 by Pjotr Prins, last updated 18 hours ago by Pjotr Prins
- AI Community Symposium at iHub
document created 46 hours ago by Brian Muhia, last updated 45 hours ago by Pjotr Prins
- Letsencrypt
✓ issue opened on Oct 13 2021 by Pjotr Prins, last updated 3 days ago by Pjotr Prins; 2 of 2 tasks done
- Pkgconfig
document created 3 days ago by Pjotr Prins
- CLI Script to Generate Text Files
issue opened 6 weeks ago by Frederick Muriuki Muriithi, last updated 5 days ago by Alexander_Kabui
- Add option to directly link to mapping results
issue opened 9 days ago by Zachary Sloan
- Deploy GeneNetwork
document created 10 days ago by Arun Isaac
- Big File Upload Fails
issue opened 11 days ago by Frederick Muriuki Muriithi
- Running postgres in a Guix container
document created 11 days ago by Pjotr Prins
- List of proposed changes for PCA traits/figures in Correlation Matrix page
issue opened 3 weeks ago by Zachary Sloan
- How to Start GN2 and GN3
document created 7 weeks ago by Zachary Sloan, last updated 5 weeks ago by Pjotr Prins
- R/qtl JSONDecodeError
✓ issue opened 5 weeks ago by Pjotr Prins, last updated 5 weeks ago by Pjotr Prins; 3 of 3 tasks done
- Guix packages
document created 5 weeks ago by Pjotr Prins
- Updating Guix profiles (for production and development)
document created on Jun 14 2022 by Arun Isaac, last updated 5 weeks ago by Pjotr Prins
- metadata caching bug
✓ issue opened on Mar 18 2022 by Alexander Kabui, last updated 5 weeks ago by Pjotr Prins; 2 of 2 tasks done
- Using curl
document created 5 weeks ago by Pjotr Prins
- GN1 annotation page broken
issue opened 5 weeks ago by Pjotr Prins
- GN Services
document created on Sep 15 2021 by Pjotr Prins, last updated 5 weeks ago by Pjotr Prins
- Starting GN1
document created 7 weeks ago by Pjotr Prins, last updated 5 weeks ago by Pjotr Prins
- Correlation results wrong for certain traits/datasets
issue opened 7 weeks ago by Zachary Sloan, last updated 5 weeks ago by Zachary Sloan
- Migrate User Accounts from Redis to new Auth DB
issue opened 5 weeks ago by Frederick Muriuki Muriithi
- Build Registration Page for OAuth2 Clients
issue opened 5 weeks ago by Frederick Muriuki Muriithi
- Authentication/authorisation design
document created on Oct 17 2022 by Pjotr Prins, last updated 5 weeks ago by Frederick Muriuki Muriithi
- Do not conflict with 'random' module
✓ issue opened 5 weeks ago by Arun Isaac, last updated 5 weeks ago by Frederick Muriuki Muriithi
- Materialised Views for Correlations
✓ issue opened on Oct 19 2022 by Frederick Muriuki Muriithi, last updated 6 weeks ago by Frederick Muriuki Muriithi
- GN1 Pairscan
✓ issue opened on Sep 15 2021 by Pjotr Prins, last updated 6 weeks ago by Pjotr Prins
- Marker mapping
✓ issue opened on Sep 15 2021 by Pjotr Prins, last updated 6 weeks ago by Pjotr Prins
- GN1 github problem
issue opened 6 weeks ago by Pjotr Prins
- GN1 annotation page broken
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated 6 weeks ago by Pjotr Prins; 0 of 2 tasks done
- Dump sample data to LMDB
issue opened 6 weeks ago by Munyoki Kilyungi; 1 of 4 tasks done
- Annotate traits page with metadata from RDF
✓ issue opened on Sep 30 2022 by Munyoki Kilyungi, last updated 6 weeks ago by Munyoki Kilyungi; 16 of 16 tasks done
- Add Sample Size to RDF
issue opened 6 weeks ago by Munyoki Kilyungi
- Virtuoso
document created on Aug 27 2021 by Pjotr Prins, last updated 6 weeks ago by Munyoki Kilyungi
- Fix Broken UTF-8 characters in our Database
issue opened on Nov 29 2022 by Munyoki Kilyungi, last updated 6 weeks ago by Munyoki Kilyungi
- Tux02 Production
issue opened on Oct 07 2021 by Pjotr Prins, last updated 6 weeks ago by Pjotr Prins; 17 of 22 tasks done
- Add LICENSE page to GN2
issue opened 7 weeks ago by Pjotr Prins
- DNS changes
document created on Sep 03 2022 by Pjotr Prins, last updated 7 weeks ago by Pjotr Prins
- GN1 metadata
issue opened 7 weeks ago by Pjotr Prins; 0 of 3 tasks done
- Update production
document created 7 weeks ago by Pjotr Prins, last updated 7 weeks ago by Pjotr Prins
- Genotype Metadata
issue opened on Nov 29 2022 by Munyoki Kilyungi
- issues/sorting-correlation-nan-vals.gmi
issue opened on Nov 28 2022 by AlexanderKabui
- Correlations: Returning Fewer Results
issue opened on Nov 07 2022 by AlexanderKabui, last updated on Nov 25 2022 by Zachary Sloan
- Decouple Tasks in Correlations Results Display
issue opened on Oct 24 2022 by Frederick Muriuki Muriithi, last updated on Nov 25 2022 by Frederick Muriuki Muriithi
- Phenotype Naming Conventions
document created on Nov 23 2022 by Munyoki Kilyungi
- Fix some display issue with the Correlation Results table (plus add column resizing)
✓ issue opened on May 11 2022 by Zachary Sloan, last updated on Nov 22 2022 by Zachary Sloan
- Correlations: Fewer Results than Expected
issue opened on Nov 22 2022 by Frederick Muriuki Muriithi
- Trait Page Errors on CD
issue opened on Nov 22 2022 by Frederick Muriuki Muriithi
- Correlations are not including f1 parents
issue opened on Nov 07 2022 by AlexanderKabui, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Correlations timing out for "UMUTAffy Hippocampus Exon (Feb09) RMA" correlations (and probably some others)
issue opened on Oct 17 2022 by Zachary Sloan, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Remove Extra Partial Correlations Options
✓ issue opened on May 16 2022 by Frederick Muriuki Muriithi, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Phenotype Correlation Error
✓ issue opened on Sep 28 2022 by Zachary Sloan, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Implementing parallel correlation with rust
✓ issue opened on Apr 25 2022 by Alexander Kabui, last updated on Nov 22 2022 by Frederick Muriuki Muriithi; 8 of 12 tasks done
- Correlations time out
✓ issue opened on Aug 06 2021 by Pjotr Prins, last updated on Nov 22 2022 by Frederick Muriuki Muriithi; 2 of 3 tasks done
- Correlations are wrongly always using all samples
✓ issue opened on Oct 21 2022 by Zachary Sloan, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Correlations fail for at least some ProbeSet datasets (as the target dataset)
✓ issue opened on Oct 17 2022 by Zachary Sloan, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Remove externally loaded JS
issue opened on Apr 18 2022 by BonfaceKilz, last updated on Nov 21 2022 by AlexanderKabui
- Dataset Queried Twice
✓ issue opened on Oct 20 2022 by Frederick Muriuki Muriithi, last updated on Nov 21 2022 by AlexanderKabui
- Data Uploads: Zero Representation
✓ issue opened on Feb 08 2022 by BonfaceKilz, last updated on Nov 11 2022 by Munyoki Kilyungi
- Notify a user after a minor change
✓ issue opened on Nov 09 2022 by Munyoki Kilyungi, last updated on Nov 11 2022 by Munyoki Kilyungi
- Long samplenames overflow in Haplotype Analyst
issue opened on Nov 11 2022 by Zachary Sloan
- Global search doesn't seem to return phenotype traits
issue opened on Nov 11 2022 by Zachary Sloan
- Editing traits for BXDs is failing for "%" substitution
issue opened on Nov 09 2022 by Munyoki Kilyungi, last updated on Nov 09 2022 by Munyoki Kilyungi
- User Registration
document created on Nov 02 2022 by Frederick Muriuki Muriithi
- Password Reset
document created on Nov 02 2022 by Frederick Muriuki Muriithi
- Run Correlations in External Process
✓ issue opened on Oct 19 2022 by Frederick Muriuki Muriithi, last updated on Oct 31 2022 by Frederick Muriuki Muriithi
- Xapian indexing
document created on Oct 30 2022 by Arun Isaac
- Errors, defects and missing data in the database
issue opened on Oct 27 2022 by Arun Isaac, last updated on Oct 30 2022 by Arun Isaac
- Full text search
issue opened on Jun 30 2022 by Arun Isaac, last updated on Oct 27 2022 by Arun Isaac; 0 of 1 tasks done
- Backup Drops
document created on Oct 27 2022 by Pjotr Prins, last updated on Oct 27 2022 by Pjotr Prins
- Orchestration and fallbacks
document created on Sep 02 2022 by Pjotr Prins, last updated on Oct 25 2022 by Pjotr Prins
- Pre-Cache Datasets
issue opened on Oct 24 2022 by Frederick Muriuki Muriithi
- Do Bulk Query for Correlation Results' Display
✓ issue opened on Oct 21 2022 by Frederick Muriuki Muriithi, last updated on Oct 24 2022 by Frederick Muriuki Muriithi
- Replace IPFS
document created on Oct 06 2022 by Pjotr Prins, last updated on Oct 23 2022 by Pjotr Prins
- Genotype correlations only returning results from first chromosome
issue opened on Oct 21 2022 by Zachary Sloan
- Debug RISC-V assembly with QEMU and GDB
document created on Oct 19 2022 by Arun Isaac
- Database Migrations
issue opened on Oct 19 2022 by Frederick Muriuki Muriithi
- Developer links for
document created on May 06 2022 by Arun Isaac, last updated on Oct 16 2022 by Pjotr Prins
- Interesting links for coders
document created on Oct 16 2022 by Pjotr Prins
- Global search does not return results
✓ issue opened on Mar 22 2022 by Frederick Muriuki Muriithi, last updated on Oct 14 2022 by Arun Isaac
- Global search does not close connections properly (and is slow)
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 14 2022 by Arun Isaac
- Global search problems
✓ issue opened on Aug 26 2022 by Pjotr Prins, last updated on Oct 14 2022 by Arun Isaac; 1 of 2 tasks done
- Add mouse data-set
issue opened on Jun 30 2022 by BonfaceKilz, last updated on Oct 12 2022 by Munyoki Kilyungi; 0 of 4 tasks done
- Editing Metadata [Improvements to Make]
issue opened on Mar 31 2022 by BonfaceKilz, last updated on Oct 12 2022 by Munyoki Kilyungi; 7 of 11 tasks done
- Automatically find broken links on GN2
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi; 2 of 2 tasks done
- Document redis data
issue opened on Nov 27 2021 by BonfaceKilz, last updated on Oct 12 2022 by Munyoki Kilyungi
- Rework Fetching Settings
issue opened on Sep 25 2022 by Munyoki Kilyungi, last updated on Oct 12 2022 by Munyoki Kilyungi
- Search results for SNP looks weird
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi
- Cannot Edit Metadata of BXD Traits Effectively
issue opened on Apr 28 2022 by BonfaceKilz, last updated on Oct 12 2022 by Munyoki Kilyungi; 10 of 12 tasks done
- Capture Data on the BXDs in RDF
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi
- Better Logging
✓ issue opened on Aug 23 2022 by Munyoki Kilyungi, last updated on Oct 12 2022 by Munyoki Kilyungi
- Fix Case Attribute Work (Consecutive CRUD applications)
issue opened on Apr 06 2022 by BonfaceKilz, last updated on Oct 12 2022 by Munyoki Kilyungi; 0 of 2 tasks done
- Error when fetching SNPs in a search page
issue opened on Sep 28 2022 by Munyoki Kilyungi, last updated on Oct 12 2022 by Munyoki Kilyungi
- Clean up Authorisation
✓ issue opened on Nov 19 2021 by BonfaceKilz, last updated on Oct 12 2022 by Munyoki Kilyungi; 4 of 4 tasks done
- CI/ CD for genetwork projects
document created on Oct 12 2022 by Munyoki Kilyungi
- Case Attribute Editing Problems
issue opened on May 02 2022 by Zachary Sloan, last updated on Oct 12 2022 by Munyoki Kilyungi
- Handle Configuration Files
issue opened on Dec 03 2021 by BonfaceKilz, last updated on Oct 12 2022 by Munyoki Kilyungi
- Fix Case Attribute Work (Same Columns)
✓ issue opened on Apr 06 2022 by BonfaceKilz, last updated on Oct 12 2022 by Munyoki Kilyungi; 9 of 9 tasks done
- Automated Testing
✓ issue opened on Feb 10 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi; 0 of 10 tasks done
- Automated Testing
document created on Oct 12 2022 by Munyoki Kilyungi
- Integrate Feed Analyser
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi
- Xapian scalability
document created on Oct 10 2022 by Arun Isaac, last updated on Oct 11 2022 by Arun Isaac
- Using guix-bioinformatics in a channels.scm file
issue opened on Aug 15 2021 by Efraim Flashner, last updated on Oct 09 2022 by Pjotr Prins
- Shepherd
document created on Aug 27 2021 by Pjotr Prins, last updated on Oct 08 2022 by Pjotr Prins
- Terminal output to the browser
issue opened on Oct 28 2021 by jgart, last updated on Oct 07 2022 by Arun Isaac
- Useful Shell Scripts
document created on Oct 06 2022 by Munyoki Kilyungi, last updated on Oct 06 2022 by Munyoki Kilyungi
- Rebooting the GN production machine(s)
issue opened on Jan 01 2022 by Pjotr Prins, last updated on Oct 06 2022 by Pjotr Prins; 4 of 4 tasks done
- Decommission machines
issue opened on Oct 06 2021 by Pjotr Prins, last updated on Oct 05 2022 by Pjotr Prins; 11 of 22 tasks done
- Maybe monad
document created on Sep 25 2022 by Munyoki Kilyungi, last updated on Sep 30 2022 by Munyoki Kilyungi
- Coding guidelines
document created on Aug 25 2022 by Arun Isaac, last updated on Sep 30 2022 by Munyoki Kilyungi
- Add Metadata To The Trait Page (RDF)
document created on Sep 28 2022 by Munyoki Kilyungi, last updated on Sep 30 2022 by Munyoki Kilyungi
- Coding Anti-Patterns
document created on Sep 29 2022 by Munyoki Kilyungi, last updated on Sep 30 2022 by Munyoki Kilyungi
- 'TempDataSet' object has no attribute 'query_for_group' (error)
✓ issue opened on Mar 22 2022 by Frederick Muriuki Muriithi, last updated on Sep 28 2022 by Alexander_Kabui
- Mapping: Haley-Knott Regression: Zooming Bug
✓ issue opened on Sep 22 2022 by Zachary Sloan, last updated on Sep 28 2022 by Alexander_Kabui
- Queries and Prepared Statements in Python
document created on Sep 27 2022 by Frederick Muriuki Muriithi, last updated on Sep 28 2022 by Alexander_Kabui
- Failing Tests
✓ issue opened on Aug 03 2022 by Frederick Muriuki Muriithi, last updated on Sep 20 2022 by Alexander_Kabui
- Fix Missing Genotype Files for GEMMA
issue opened on Sep 13 2022 by Frederick Muriuki Muriithi, last updated on Sep 20 2022 by Frederick Muriuki Muriithi; 1 of 3 tasks done
- GEMMA should report name of missing genotype file
✓ issue opened on Aug 20 2022 by Arun Isaac, last updated on Sep 19 2022 by Arun Isaac
- Missing Python Module(s) for GeneNetwork3
issue opened on Sep 19 2022 by Frederick Muriuki Muriithi
- Annotation
issue opened on Sep 14 2022 by Pjotr Prins, last updated on Sep 14 2022 by Pjotr Prins; 0 of 5 tasks done
- Add track for showing which regions in mouse/rat correspond to human regions to the mapping figure
issue opened on Jul 21 2022 by Zachary Sloan, last updated on Sep 14 2022 by Pjotr Prins
- Building a ~guix pack~ for Environment Sharing
document created on Sep 13 2022 by Frederick Muriuki Muriithi
- Simplify `dataset.py` in GeneNetwork2
issue opened on Sep 13 2022 by Frederick Muriuki Muriithi
- Markdown docs
issue opened on Sep 10 2022 by Pjotr Prins
- Replace sqlalchemy with MySQLdb
✓ issue opened on Aug 29 2022 by Munyoki Kilyungi, last updated on Sep 08 2022 by Munyoki Kilyungi
- Improving Logging in GN2
document created on Aug 23 2022 by Munyoki Kilyungi, last updated on Sep 08 2022 by Munyoki Kilyungi
- Setting up Local Development Database
document created on Aug 19 2022 by Frederick Muriuki Muriithi, last updated on Sep 08 2022 by Arun Isaac
- Tests for the genodb genotype database
✓ issue opened on Aug 30 2022 by Arun Isaac, last updated on Sep 05 2022 by Alexander_Kabui
- tux01 running out of RAM
issue opened on Sep 03 2022 by Pjotr Prins, last updated on Sep 05 2022 by Alexander_Kabui; 1 of 6 tasks done
- Second production on tux02
issue opened on Aug 23 2022 by Arun Isaac, last updated on Sep 05 2022 by Alexander_Kabui
- GN2 Time Machines
issue opened on Aug 19 2022 by Pjotr Prins, last updated on Sep 05 2022 by Alexander_Kabui; 4 of 10 tasks done
- MySQLdb._exceptions.OperationalError: (1040, 'Too many connections')
✓ issue opened on Aug 29 2022 by Munyoki Kilyungi, last updated on Sep 05 2022 by Alexander_Kabui; 2 of 2 tasks done
- Resurrect Mechanical Rob
✓ issue opened on Aug 23 2022 by Arun Isaac, last updated on Sep 05 2022 by Alexander_Kabui
- Genewiki conversion
issue opened on Aug 26 2022 by Pjotr Prins, last updated on Sep 05 2022 by Alexander_Kabui; 0 of 3 tasks done
- UTHSC VPN with free software
document created on Aug 22 2022 by Arun Isaac, last updated on Sep 05 2022 by Alexander_Kabui
- Use exceptions to indicate errors
document created on Aug 25 2022 by Arun Isaac, last updated on Sep 05 2022 by Alexander_Kabui
- topics/systems/migrate-p2.gmi
document created on Sep 02 2022 by Pjotr Prins, last updated on Sep 05 2022 by Alexander_Kabui
- Timeout in CD
✓ issue opened on Jul 22 2022 by Arun Isaac, last updated on Aug 17 2022 by Arun Isaac
- Miscellaneous UI issues
✓ issue opened on Apr 08 2022 by Zachary Sloan, last updated on Aug 08 2022 by Munyoki Kilyungi
- Enable all DataTables to call the same code
issue opened on Jul 26 2022 by Zachary Sloan, last updated on Jul 27 2022 by Zachary Sloan
- Buggy Use of `urllib.parse.urljoin`
issue opened on Jul 25 2022 by Frederick Muriuki Muriithi
- Allow analyses to be done between traits from "individuals" groups and their corresponding "main" group
issue opened on Jul 21 2022 by Zachary Sloan
- UI Design
✓ issue opened on Dec 01 2021 by jgart, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
- Rewrite qc and qc-uploads in Python3
issue opened on Apr 11 2022 by Frederick Muriuki Muriithi, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
- Quality Control Project
✓ issue opened on Nov 19 2021 by Arthur Centeno, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
- Quality Control Checks
✓ issue opened on Nov 17 2021 by jgart, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
- Gene Symbol Mappings
✓ issue opened on Nov 22 2021 by jgart, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
- Enumerating all QC checks
✓ issue opened on Nov 19 2021 by jgart, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
- Use genodb in genenetwork
issue opened on Jul 19 2022 by Arun Isaac
- Add the option to save traits uploaded with the Submit Trait option
issue opened on Jul 19 2022 by Zachary Sloan
- GeneNetwork Hacking Documentation
document created on Mar 11 2022 by Frederick Muriuki Muriithi, last updated on Jul 18 2022 by Frederick Muriuki Muriithi
- Broken continuous deployment
✓ issue opened on Jul 06 2022 by Arun Isaac, last updated on Jul 11 2022 by Frederick Muriuki Muriithi
- Add convenience templates
✓ issue opened on Oct 28 2021 by jgart, last updated on Jul 11 2022 by Arun Isaac
- Add a transient interface for tissue
✓ issue opened on Mar 28 2022 by BonfaceKilz, last updated on Jul 08 2022 by Arun Isaac
- Slow Correlations and UI crashes
✓ issue opened on Oct 18 2021 by BonfaceKilz, last updated on Jul 08 2022 by Alexander_Kabui
- Gn3 network dependency
issue opened on Mar 18 2022 by Alexander Kabui, last updated on Jul 08 2022 by Alexander_Kabui
- MariaDB
document created on Oct 26 2021 by Pjotr Prins, last updated on Jul 06 2022 by Arun Isaac
- A linter for gnbug
✓ issue opened on Oct 28 2021 by jgart, last updated on Jul 06 2022 by Arun Isaac
- Render images in tissue web output
✓ issue opened on Apr 20 2022 by Arun Isaac, last updated on Jul 06 2022 by Arun Isaac
- Some Historical Context
document created on Jul 05 2022 by BonfaceKilz
- MariaDB: Move to InnoDB Engine
issue opened on Dec 28 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac; 0 of 2 tasks done
- Clean Up
issue opened on Jan 02 2022 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac
- ProbeSetXRef
issue opened on Dec 29 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac
- ProbeSetData
issue opened on Dec 31 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac; 6 of 13 tasks done
- ProbeSE
issue opened on Dec 30 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac
- ProbeData
issue opened on Dec 30 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac
- Sheepdog
issue opened on Nov 08 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac; 3 of 17 tasks done
- Octopus sysmaintenance
✓ issue opened on Oct 12 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac; 5 of 5 tasks done
- Machine room
issue opened on Nov 23 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac; 1 of 4 tasks done
- GN1 Time machines
issue opened on Oct 07 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac
- Fallbacks and backups
issue opened on Aug 31 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac; 19 of 24 tasks done
- Public inbox
issue opened on Jun 29 2022 by Arun Isaac
- Redirect HTTP to HTTPS
✓ issue opened on Jul 31 2021 by Arun Isaac, last updated on Jun 24 2022 by Frederick Muriuki Muriithi
- Improve Menu Generation and Move it to GN3
✓ issue opened on May 16 2022 by Frederick Muriuki Muriithi, last updated on Jun 23 2022 by Frederick Muriuki Muriithi; 2 of 3 tasks done
- Genotype database
document created on Jun 03 2022 by Arun Isaac, last updated on Jun 22 2022 by Arun Isaac
- Scree Plot appears to be incorrect
issue opened on May 19 2022 by Zachary Sloan, last updated on Jun 15 2022 by BonfaceKilz
- Using PDB to Troubleshoot Python Code
document created on May 26 2022 by BonfaceKilz, last updated on May 26 2022 by BonfaceKilz
- Add "Target" (Y) Column in Partial Correlations Selection Table
✓ issue opened on Apr 22 2022 by Frederick Muriuki Muriithi, last updated on May 26 2022 by Frederick Muriuki Muriithi
- GN3: Technical Debt
✓ issue opened on Feb 08 2022 by BonfaceKilz, last updated on May 25 2022 by BonfaceKilz
- issues/fetch-sample-data.gmi
✓ issue opened on Aug 09 2021 by BonfaceKilz, last updated on May 25 2022 by BonfaceKilz
- Missing CI/CD Definitions for "Service" Daemons
✓ issue opened on May 16 2022 by Frederick Muriuki Muriithi, last updated on May 16 2022 by Frederick Muriuki Muriithi; 1 of 1 tasks done
- Partial Correlation
document created on Oct 15 2021 by Frederick Muriuki Muriithi, last updated on May 16 2022 by Frederick Muriuki Muriithi
- Uninformative error when batch submitting unknown strains
issue opened on May 05 2022 by BonfaceKilz
- Effect size for GEMMA is a MUST
issue opened on Apr 18 2022 by Rob Williams, last updated on Apr 29 2022 by Arun Isaac
- Make Partial Correlations Table Searchable
issue opened on Apr 22 2022 by Frederick Muriuki Muriithi
- Fix Collection Export
✓ issue opened on Apr 20 2022 by Zachary Sloan, last updated on Apr 21 2022 by Zachary Sloan
- Mapping figure can't be horizontally scrolled
✓ issue opened on Apr 20 2022 by Zachary Sloan, last updated on Apr 21 2022 by Zachary Sloan
- DOL group mapping issues
✓ issue opened on Apr 07 2022 by Zachary Sloan, last updated on Apr 20 2022 by Zachary Sloan
- Create a new UI language for gn2
issue opened on Apr 18 2022 by BonfaceKilz
- Add an 'Edit Issue' Link to Tissue
✓ issue opened on Mar 24 2022 by Frederick Muriuki Muriithi, last updated on Apr 15 2022 by Arun Isaac
- Cool Interfaces We Should Emulate
issue opened on Apr 13 2022 by BonfaceKilz, last updated on Apr 14 2022 by BonfaceKilz
- Zoomed mapping result are empty for certain traits
issue opened on Apr 11 2022 by Zachary Sloan, last updated on Apr 13 2022 by Zachary Sloan
- correlation error: 'NoneType' object is not iterable
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Apr 13 2022 by Alexander Kabui
- Wrong CSV in ITP_10001 longevity dataset
✓ issue opened on Apr 11 2022 by BonfaceKilz, last updated on Apr 12 2022 by BonfaceKilz
- Building Guix packages for RISC-V
document created on Apr 08 2022 by Arun Isaac
- BXD102xBXD077F1 Error
✓ issue opened on Mar 22 2022 by Frederick Muriuki Muriithi, last updated on Apr 07 2022 by Zachary Sloan
- Adding principal component to collection returns an error
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Apr 07 2022 by Alexander Kabui
- Remove everything elastic search
✓ issue opened on Oct 22 2021 by Pjotr Prins, last updated on Apr 01 2022 by BonfaceKilz
- topics/data-uploads/inserting-traits.gmi
document created on Mar 30 2022 by Zachary Sloan, last updated on Mar 30 2022 by Zachary Sloan
- Top 10 Things to Test
document created on Mar 28 2022 by BonfaceKilz
- Error when attempt to zoom to a chromosome after mapping a PCA trait
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
- Multi-trait heat map failed
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
- Unable to open new tab for mapping/ correlations with Chrome
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
- Slow query
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
- Add search, select and export to datatables table
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
- Capture state of phenotypes in a HASH
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
- Fetch trait names for phenotypes
issue opened on Mar 22 2022 by Frederick Muriuki Muriithi
- Variant Browser seems to be using mm9
issue opened on Mar 22 2022 by Frederick Muriuki Muriithi
- csv export meta data are not commented out
issue opened on Mar 22 2022 by Frederick Muriuki Muriithi
- Hide stale issues in gnbug
✓ issue opened on Jan 31 2022 by Arun Isaac, last updated on Mar 22 2022 by Arun Isaac
- Sort gnbug issues most recent first
✓ issue opened on Jan 31 2022 by Arun Isaac, last updated on Mar 22 2022 by Arun Isaac
- Migrate GN1 Clustering
document created on Jul 18 2021 by Pjotr Prins, last updated on Mar 22 2022 by Frederick Muriuki Muriithi
- Remove Elastic Search
✓ issue opened on Oct 28 2021 by BonfaceKilz, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Each shepherd service needs its own guix profile.
issue opened on Nov 03 2021 by Efraim Flashner, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- GN1 symbols
issue opened on Nov 23 2021 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi; 0 of 2 tasks done
- Proxy has hard coded URLs
issue opened on Oct 22 2021 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Arthur mentioned last meet that GeneNetwork2 does not redirect http urls to https.
issue opened on Dec 05 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Need Guix packages
issue opened on Mar 12 2022 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Document API endpoints for GeneNetwork3
issue opened on Mar 04 2022 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Databases Getting Out of Wack
issue opened on Mar 03 2022 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Large datasets crash gemma
issue opened on Mar 12 2022 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi; 0 of 7 tasks done
- Guix: Using guix shell with root file
issue opened on Jan 27 2022 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Return canned text if notebook description returns none
issue opened on Oct 28 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- R Kernel Dying
issue opened on Jan 17 2022 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Integrate styling of app with GN2
issue opened on Oct 28 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- When binderlite finds an unkown package in a guix manifest
issue opened on Oct 01 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Add Regular Expression to Prevent Invalid Input
issue opened on Oct 01 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Add configuration to set server name
issue opened on Nov 10 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- BigBlueButton
document created on Mar 05 2022 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Running pudb From an External Environment
document created on Dec 22 2021 by Frederick Muriuki Muriithi, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Shapiro Wilk Test
document created on Nov 24 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Using pudb
document created on Dec 21 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Using pudb with pytest
document created on Dec 21 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Profiling Python code
document created on Dec 22 2021 by Frederick Muriuki Muriithi, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Reproducibility
document created on Oct 04 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- CLI Features
document created on Oct 12 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Defining a scheme sexp comment with a reader macro
document created on Feb 02 2022 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Lisp For Schemers
document created on Dec 29 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Common Lisp Condition Handling
document created on Dec 28 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Debugging Lisp
document created on Dec 22 2021 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Common LISP: sly
document created on Jan 29 2022 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Common LISP: Notes
document created on Feb 09 2022 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Non-Clustered and Flippable Heatmaps
document created on Oct 01 2021 by Frederick Muriuki Muriithi, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Ideas and References
document created on Nov 22 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- gemtext cheatsheet
document created on Dec 21 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- GeneNetwork documentation
document created on Nov 16 2021 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Data Uploads: Reversing a Diff
document created on Feb 03 2022 by BonfaceKilz, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Data Uploads: Inserting Data
document created on Jan 27 2022 by BonfaceKilz, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Weechat
document created on Nov 04 2021 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Put user info in the a/c name in the menu
document created on Mar 14 2022 by Frederick Muriuki Muriithi, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Replace Hard coded authentication with gn-proxy
document created on Mar 14 2022 by Frederick Muriuki Muriithi, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- COVID-19
document created on Nov 14 2021 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Tux01 hard disk crash
issue opened on Sep 29 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- GN1 Slowness
issue opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- GN1 Production
issue opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi; 3 of 8 tasks done
- Fix GN1 Network Graph
issue opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Marker covariates implemented wrong in rqtl_wrapper.R
issue opened on Sep 22 2021 by Zachary Sloan, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- genecup is currently running as root on penguin2.
issue opened on Aug 15 2021 by Efraim Flashner, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Multivariate GEMMA hangs (issue 243)
issue opened on Aug 16 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Make build green
✓ issue opened on Dec 21 2021 by BonfaceKilz, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Medaka Inbred Kiyosu-Karlsruhe (MIKK) Panel
issue opened on Sep 22 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Show Template for when Git URL is not Found
issue opened on Sep 28 2021 by jgart, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- GeneNetwork CLI
document created on Sep 20 2021 by jgart, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Adding Terminal Output
document created on Aug 07 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Add button to delete an entire dataset in gn2
document created on Sep 08 2021 by BonfaceKilz, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Next Steps
document created on Sep 09 2021 by jgart, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- port map
document created on Sep 20 2021 by jgart, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Julia Pluto
document created on Aug 31 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Jupyter notebooks
document created on Sep 01 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Guix Containers
document created on Oct 01 2021 by jgart, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Binding notebooks
document created on Aug 22 2021 by jgart, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- LMM Notes
document created on Aug 13 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- topics/data-uploads/editing-data.gmi
document created on Nov 23 2021 by BonfaceKilz, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- BNW interface for GN2
document created on Oct 18 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- gemma-wrapper has incomplete files
✓ issue opened on Nov 14 2021 by Pjotr Prins, last updated on Feb 17 2022 by Pjotr Prins; 2 of 2 tasks done
- GEMMA GSL ERROR: function value is not finite in brent.c
✓ issue opened on Aug 14 2021 by Pjotr Prins, last updated on Feb 17 2022 by Pjotr Prins
- file upload size limit
✓ issue opened on Feb 16 2022 by jgart, last updated on Feb 16 2022 by jgart
- Designing an issue tracker on gemini
✓ issue opened on Jul 25 2021 by Pjotr Prins, last updated on Feb 02 2022 by Pjotr Prins
- Open notebook directly if full path to notebook file is given
✓ issue opened on Nov 04 2021 by jgart, last updated on Dec 22 2021 by Frederick Muriuki Muriithi
- Nginx forwarding error regarding static assets
✓ issue opened on Nov 10 2021 by jgart, last updated on Dec 22 2021 by Frederick Muriuki Muriithi
- issues/binderlite/add-spinner-for-submit-form.gmi
✓ issue opened on Nov 10 2021 by jgart, last updated on Dec 22 2021 by Frederick Muriuki Muriithi
- Binderlite Notebook Gallery
✓ issue opened on Oct 04 2021 by jgart, last updated on Oct 21 2021 by jgart
- gnbug cat
✓ issue opened on Sep 22 2021 by jgart, last updated on Sep 28 2021 by jgart
- Maybe `gnbug` should be an alias for `gnbug list`
✓ issue opened on Sep 22 2021 by jgart, last updated on Sep 22 2021 by Arun Isaac
- Information about lizardfs, and some usage suggestions
document created on Jul 18 2021 by Pjotr Prins, last updated on Jul 18 2021 by Efraim Flashner