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LMDB Phenotype/Genotype Store
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lead: bonfacem
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team: fred, alex
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contact: pjotr
Please go through:
Tasks
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Go through the above repository. We'll have a check in on Friday 23 to discuss this.
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Write and package guile-lmdb. Use cl-lmdb as inspiration
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Find out a more efficient way to store utf-8 strings
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Integrate LMDB in GN:
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Rewrite some statistical computations using LMDB+RDF
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Integrate editing LMDB entries using Fred's new auth system
Actionable items (Week 1):
Bonface:
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[A] Setup a directoryallowed for dumping rdf files
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[A] Autogenerate documentation: trees, and labels. How do you test for correctness and completeness in a data store?
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[C] guile bindings for lmdb for important stuff
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[B] Using hashes to track updates on database---proposal
Alex:
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Fetching all the phenotype data from the database using sql and genotype file
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Using LMBD as input for correlations---make proposal for how we can export data in a way we can use
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example implementation for this:
Fred:
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Fetch metadata in RDF and possibly document things