- Add/Share Datasets HTMX Page
✓ issue opened 7 days ago by Munyoki Kilyungi, last updated 3 days ago by Munyoki Kilyungi
- Clean up Authorisation
✓ issue opened on Nov 19 2021 by BonfaceKilz, last updated 7 days ago by Frederick Muriuki Muriithi; 4 of 4 tasks done
- Minor Phenotype Page UI updates
✓ issue opened 11 days ago by Munyoki Kilyungi, last updated 10 days ago by Munyoki Kilyungi; 6 of 6 tasks done
- Genotype correlations only returning results from first chromosome
✓ issue opened on Oct 21 2022 by Zachary Sloan, last updated 12 days ago by Zachary Sloan
- Buggy Use of `urllib.parse.urljoin`
✓ issue opened on Jul 25 2022 by Frederick Muriuki Muriithi, last updated 13 days ago by Frederick Muriuki Muriithi
- Big File Upload Fails
✓ issue opened on Jan 17 2023 by Frederick Muriuki Muriithi, last updated 13 days ago by Frederick Muriuki Muriithi
- Add to Collection Error
✓ issue opened on Oct 09 2023 by Frederick Muriuki Muriithi, last updated 13 days ago by Frederick Muriuki Muriithi
- Rewrite qc and qc-uploads in Python3
✓ issue opened on Apr 11 2022 by Frederick Muriuki Muriithi, last updated 13 days ago by Frederick Muriuki Muriithi
- Conflating `dataset_id` with `inbred_set_id`
✓ issue opened on Jul 18 2023 by Frederick Muriuki Muriithi, last updated 13 days ago by Frederick Muriuki Muriithi
- Remove bcrypt as a Dependency
✓ issue opened 6 weeks ago by Frederick Muriuki Muriithi, last updated 14 days ago by Frederick Muriuki Muriithi
- Phenotype Correlation Error
✓ issue opened on Sep 28 2022 by Zachary Sloan, last updated 14 days ago by Frederick Muriuki Muriithi
- Move Data Endpoints from GN2 to GN3
✓ issue opened 5 weeks ago by Frederick Muriuki Muriithi, last updated 5 weeks ago by Frederick Muriuki Muriithi
- Fix Failing MR Failing Tests
✓ issue opened on Sep 13 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Fix possible python 3.10 linting errors after bump from 3.9
✓ issue opened on Jun 06 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Migrate to Python3.10
✓ issue opened on Jul 12 2023 by Frederick Muriuki Muriithi, last updated on Oct 11 2023 by Munyoki Kilyungi; 0 of 1 tasks done
- Rework Fetching Settings
✓ issue opened on Sep 25 2022 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Model Menu In RDF
✓ issue opened on Apr 18 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Integrate Feed Analyser
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Incorrect PubMed IDs in the Publication Table
✓ issue opened on May 09 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Improve sparql results
✓ issue opened on Jul 07 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Autogenerate documentation: trees, and labels
✓ issue opened on Jun 23 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Try out Auth Code Locally
✓ issue opened on Apr 21 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi; 2 of 2 tasks done
- Order entries in CSV dump
✓ issue opened on Mar 20 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Modelling Phenotype Data
✓ issue opened on Aug 08 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Genotype Metadata
✓ issue opened on Nov 29 2022 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Need Guix packages
✓ issue opened on Mar 12 2022 by Pjotr Prins, last updated on Oct 11 2023 by Munyoki Kilyungi
- Create a new UI language for gn2
✓ issue opened on Apr 18 2022 by BonfaceKilz, last updated on Oct 11 2023 by Munyoki Kilyungi
- Broken Indexing
✓ issue opened on May 03 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Invalid Token Error
✓ issue opened on Aug 25 2023 by Zachary Sloan, last updated on Aug 31 2023 by Frederick Muriuki Muriithi
- Fix Broken UTF-8 characters in our Database
✓ issue opened on Nov 29 2022 by Munyoki Kilyungi, last updated on Aug 29 2023 by Munyoki Kilyungi
- Guixify LLM container
✓ issue opened on Jul 20 2023 by Munyoki Kilyungi, last updated on Jul 25 2023 by Munyoki Kilyungi
- Delete Rejected Diffs from Database
✓ issue opened on Jul 25 2023 by Frederick Muriuki Muriithi, last updated on Jul 25 2023 by Frederick Muriuki Muriithi
- Show "Edit" Button for All Users
✓ issue opened on Jul 24 2023 by Frederick Muriuki Muriithi, last updated on Jul 24 2023 by Frederick Muriuki Muriithi
- Sample Data not Appearing in Phenotype-Editing Page
✓ issue opened on Jul 12 2023 by Frederick Muriuki Muriithi, last updated on Jul 12 2023 by Frederick Muriuki Muriithi
- Implementing parallel correlation with rust
✓ issue opened on Apr 25 2022 by Alexander Kabui, last updated on Jul 11 2023 by Alexander_Kabui; 12 of 15 tasks done
- Upload probeset metadata
✓ issue opened on Jun 19 2023 by Munyoki Kilyungi, last updated on Jun 26 2023 by Munyoki Kilyungi
- Create Traits Endpoints in RDF
✓ issue opened on May 18 2023 by Munyoki Kilyungi, last updated on Jun 19 2023 by Munyoki Kilyungi; 3 of 3 tasks done
- Genenetwork3 Effective UID
✓ issue opened on Jun 05 2023 by Frederick Muriuki Muriithi, last updated on Jun 09 2023 by Frederick Muriuki Muriithi
- Build Registration Page for OAuth2 Clients
✓ issue opened on Dec 22 2022 by Frederick Muriuki Muriithi, last updated on May 30 2023 by Frederick Muriuki Muriithi
- Enable User Masquerade
✓ issue opened on May 22 2023 by Frederick Muriuki Muriithi, last updated on May 23 2023 by Frederick Muriuki Muriithi
- Use "Authorisation Code Flow" for Authentication
✓ issue opened on May 08 2023 by Frederick Muriuki Muriithi, last updated on May 22 2023 by Frederick Muriuki Muriithi
- Migrate User Collections
✓ issue opened on May 08 2023 by Frederick Muriuki Muriithi, last updated on May 22 2023 by Frederick Muriuki Muriithi
- Migrate User Accounts from Redis to new Auth DB
✓ issue opened on Dec 22 2022 by Frederick Muriuki Muriithi, last updated on May 22 2023 by Frederick Muriuki Muriithi
- Give Examples of Fetching GeneRIF Metadata in Sparql
✓ issue opened on Apr 04 2023 by Munyoki Kilyungi, last updated on May 18 2023 by Munyoki Kilyungi
- Document xapian search code architecture
✓ issue opened on Mar 20 2023 by Arun Isaac, last updated on May 05 2023 by Arun Isaac
- Troubleshoot CD Menu Failure
✓ issue opened on Apr 21 2023 by Munyoki Kilyungi, last updated on Apr 26 2023 by Munyoki Kilyungi
- Upload GeneWiki RDF metadata to CD
✓ issue opened on Apr 17 2023 by Munyoki Kilyungi, last updated on Apr 18 2023 by Munyoki Kilyungi
- Add GeneRIF page
✓ issue opened on Apr 14 2023 by Munyoki Kilyungi, last updated on Apr 18 2023 by Munyoki Kilyungi
- Unable to open new tab for mapping/ correlations with Chrome
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Apr 18 2023 by Munyoki Kilyungi
- Document redis data
✓ issue opened on Nov 27 2021 by BonfaceKilz, last updated on Apr 18 2023 by Munyoki Kilyungi
- Proxy has hard coded URLs
✓ issue opened on Oct 22 2021 by Pjotr Prins, last updated on Apr 18 2023 by Munyoki Kilyungi
- Error when fetching SNPs in a search page
✓ issue opened on Sep 28 2022 by Munyoki Kilyungi, last updated on Apr 18 2023 by Munyoki Kilyungi
- Fix Case Attribute Work (Consecutive CRUD applications)
✓ issue opened on Apr 06 2022 by BonfaceKilz, last updated on Apr 18 2023 by Munyoki Kilyungi; 0 of 2 tasks done
- Uninformative error when batch submitting unknown strains
✓ issue opened on May 05 2022 by BonfaceKilz, last updated on Apr 18 2023 by Munyoki Kilyungi
- Editing traits for BXDs is failing for "%" substitution
✓ issue opened on Nov 09 2022 by Munyoki Kilyungi, last updated on Apr 18 2023 by Munyoki Kilyungi
- Editing Metadata [Improvements to Make]
✓ issue opened on Mar 31 2022 by BonfaceKilz, last updated on Apr 18 2023 by Munyoki Kilyungi; 7 of 11 tasks done
- Editing Case Attribute
✓ issue opened on Mar 16 2023 by Munyoki Kilyungi, last updated on Apr 18 2023 by Munyoki Kilyungi
- Cannot Edit Metadata of BXD Traits Effectively
✓ issue opened on Apr 28 2022 by BonfaceKilz, last updated on Apr 18 2023 by Munyoki Kilyungi; 10 of 12 tasks done
- Dump GeneWiki data
✓ issue opened on Mar 30 2023 by Munyoki Kilyungi, last updated on Apr 17 2023 by Munyoki Kilyungi
- Coupling current_app and db_utils
✓ issue opened on Apr 04 2023 by Frederick Muriuki Muriithi, last updated on Apr 15 2023 by Frederick Muriuki Muriithi
- Fix load-rdf.scm script
✓ issue opened on Apr 05 2023 by Munyoki Kilyungi, last updated on Apr 05 2023 by Munyoki Kilyungi
- Dump GeneWiki Metadata
✓ issue opened on Mar 16 2023 by Munyoki Kilyungi, last updated on Apr 04 2023 by Munyoki Kilyungi
- Improve presentation of search results
✓ issue opened on Feb 13 2023 by Arun Isaac, last updated on Apr 04 2023 by Alexander_Kabui
- Add search syntax hints to web UI
✓ issue opened on Feb 15 2023 by Arun Isaac, last updated on Apr 04 2023 by Alexander_Kabui
- Enter key in global search field
✓ issue opened on Feb 13 2023 by Arun Isaac, last updated on Apr 04 2023 by Alexander_Kabui
- Document all virtuoso instances
✓ issue opened on Mar 20 2023 by Arun Isaac, last updated on Mar 31 2023 by Arun Isaac
- Xapian Search Results not Quite as Expected
✓ issue opened on Mar 25 2023 by Frederick Muriuki Muriithi, last updated on Mar 31 2023 by Arun Isaac
- Case Attribute Editing Problems
✓ issue opened on May 02 2022 by Zachary Sloan, last updated on Mar 20 2023 by Munyoki Kilyungi
- issues/add-collection-import.gmi
✓ issue opened on Apr 29 2022 by Zachary Sloan, last updated on Mar 14 2023 by Arun Isaac
- Global search doesn't seem to return phenotype traits
✓ issue opened on Nov 11 2022 by Zachary Sloan, last updated on Mar 14 2023 by Zachary Sloan
- Full text search
✓ issue opened on Jun 30 2022 by Arun Isaac, last updated on Feb 13 2023 by Arun Isaac; 1 of 1 tasks done
- R/qtl JSONDecodeError
✓ issue opened on Dec 23 2022 by Pjotr Prins, last updated on Dec 24 2022 by Pjotr Prins; 3 of 3 tasks done
- metadata caching bug
✓ issue opened on Mar 18 2022 by Alexander Kabui, last updated on Dec 23 2022 by Pjotr Prins; 2 of 2 tasks done
- Do not conflict with 'random' module
✓ issue opened on Dec 20 2022 by Arun Isaac, last updated on Dec 21 2022 by Frederick Muriuki Muriithi
- Materialised Views for Correlations
✓ issue opened on Oct 19 2022 by Frederick Muriuki Muriithi, last updated on Dec 19 2022 by Frederick Muriuki Muriithi
- GN1 Pairscan
✓ issue opened on Sep 15 2021 by Pjotr Prins, last updated on Dec 17 2022 by Pjotr Prins
- Marker mapping
✓ issue opened on Sep 15 2021 by Pjotr Prins, last updated on Dec 17 2022 by Pjotr Prins
- Annotate traits page with metadata from RDF
✓ issue opened on Sep 30 2022 by Munyoki Kilyungi, last updated on Dec 15 2022 by Munyoki Kilyungi; 16 of 16 tasks done
- Fix some display issue with the Correlation Results table (plus add column resizing)
✓ issue opened on May 11 2022 by Zachary Sloan, last updated on Nov 22 2022 by Zachary Sloan
- Remove Extra Partial Correlations Options
✓ issue opened on May 16 2022 by Frederick Muriuki Muriithi, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Correlations time out
✓ issue opened on Aug 06 2021 by Pjotr Prins, last updated on Nov 22 2022 by Frederick Muriuki Muriithi; 2 of 3 tasks done
- Correlations are wrongly always using all samples
✓ issue opened on Oct 21 2022 by Zachary Sloan, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Correlations fail for at least some ProbeSet datasets (as the target dataset)
✓ issue opened on Oct 17 2022 by Zachary Sloan, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Dataset Queried Twice
✓ issue opened on Oct 20 2022 by Frederick Muriuki Muriithi, last updated on Nov 21 2022 by AlexanderKabui
- Data Uploads: Zero Representation
✓ issue opened on Feb 08 2022 by BonfaceKilz, last updated on Nov 11 2022 by Munyoki Kilyungi
- Notify a user after a minor change
✓ issue opened on Nov 09 2022 by Munyoki Kilyungi, last updated on Nov 11 2022 by Munyoki Kilyungi
- Run Correlations in External Process
✓ issue opened on Oct 19 2022 by Frederick Muriuki Muriithi, last updated on Oct 31 2022 by Frederick Muriuki Muriithi
- Do Bulk Query for Correlation Results' Display
✓ issue opened on Oct 21 2022 by Frederick Muriuki Muriithi, last updated on Oct 24 2022 by Frederick Muriuki Muriithi
- Global search does not return results
✓ issue opened on Mar 22 2022 by Frederick Muriuki Muriithi, last updated on Oct 14 2022 by Arun Isaac
- Global search does not close connections properly (and is slow)
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 14 2022 by Arun Isaac
- Global search problems
✓ issue opened on Aug 26 2022 by Pjotr Prins, last updated on Oct 14 2022 by Arun Isaac; 1 of 2 tasks done
- Automatically find broken links on GN2
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi; 2 of 2 tasks done
- Capture Data on the BXDs in RDF
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi
- Better Logging
✓ issue opened on Aug 23 2022 by Munyoki Kilyungi, last updated on Oct 12 2022 by Munyoki Kilyungi
- Fix Case Attribute Work (Same Columns)
✓ issue opened on Apr 06 2022 by BonfaceKilz, last updated on Oct 12 2022 by Munyoki Kilyungi; 9 of 9 tasks done
- Automated Testing
✓ issue opened on Feb 10 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi; 0 of 10 tasks done
- 'TempDataSet' object has no attribute 'query_for_group' (error)
✓ issue opened on Mar 22 2022 by Frederick Muriuki Muriithi, last updated on Sep 28 2022 by Alexander_Kabui
- Mapping: Haley-Knott Regression: Zooming Bug
✓ issue opened on Sep 22 2022 by Zachary Sloan, last updated on Sep 28 2022 by Alexander_Kabui
- Failing Tests
✓ issue opened on Aug 03 2022 by Frederick Muriuki Muriithi, last updated on Sep 20 2022 by Alexander_Kabui
- GEMMA should report name of missing genotype file
✓ issue opened on Aug 20 2022 by Arun Isaac, last updated on Sep 19 2022 by Arun Isaac
- Replace sqlalchemy with MySQLdb
✓ issue opened on Aug 29 2022 by Munyoki Kilyungi, last updated on Sep 08 2022 by Munyoki Kilyungi
- Tests for the genodb genotype database
✓ issue opened on Aug 30 2022 by Arun Isaac, last updated on Sep 05 2022 by Alexander_Kabui
- MySQLdb._exceptions.OperationalError: (1040, 'Too many connections')
✓ issue opened on Aug 29 2022 by Munyoki Kilyungi, last updated on Sep 05 2022 by Alexander_Kabui; 2 of 2 tasks done
- Timeout in CD
✓ issue opened on Jul 22 2022 by Arun Isaac, last updated on Aug 17 2022 by Arun Isaac
- Miscellaneous UI issues
✓ issue opened on Apr 08 2022 by Zachary Sloan, last updated on Aug 08 2022 by Munyoki Kilyungi
- UI Design
✓ issue opened on Dec 01 2021 by jgart, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
- Quality Control Project
✓ issue opened on Nov 19 2021 by Arthur Centeno, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
- Quality Control Checks
✓ issue opened on Nov 17 2021 by jgart, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
- Gene Symbol Mappings
✓ issue opened on Nov 22 2021 by jgart, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
- Enumerating all QC checks
✓ issue opened on Nov 19 2021 by jgart, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
- Broken continuous deployment
✓ issue opened on Jul 06 2022 by Arun Isaac, last updated on Jul 11 2022 by Frederick Muriuki Muriithi
- Add convenience templates
✓ issue opened on Oct 28 2021 by jgart, last updated on Jul 11 2022 by Arun Isaac
- Add a transient interface for tissue
✓ issue opened on Mar 28 2022 by BonfaceKilz, last updated on Jul 08 2022 by Arun Isaac
- Slow Correlations and UI crashes
✓ issue opened on Oct 18 2021 by BonfaceKilz, last updated on Jul 08 2022 by Alexander_Kabui
- A linter for gnbug
✓ issue opened on Oct 28 2021 by jgart, last updated on Jul 06 2022 by Arun Isaac
- Render images in tissue web output
✓ issue opened on Apr 20 2022 by Arun Isaac, last updated on Jul 06 2022 by Arun Isaac
- Redirect HTTP to HTTPS
✓ issue opened on Jul 31 2021 by Arun Isaac, last updated on Jun 24 2022 by Frederick Muriuki Muriithi
- Improve Menu Generation and Move it to GN3
✓ issue opened on May 16 2022 by Frederick Muriuki Muriithi, last updated on Jun 23 2022 by Frederick Muriuki Muriithi; 2 of 3 tasks done
- Add "Target" (Y) Column in Partial Correlations Selection Table
✓ issue opened on Apr 22 2022 by Frederick Muriuki Muriithi, last updated on May 26 2022 by Frederick Muriuki Muriithi
- GN3: Technical Debt
✓ issue opened on Feb 08 2022 by BonfaceKilz, last updated on May 25 2022 by BonfaceKilz
- issues/fetch-sample-data.gmi
✓ issue opened on Aug 09 2021 by BonfaceKilz, last updated on May 25 2022 by BonfaceKilz
- Missing CI/CD Definitions for "Service" Daemons
✓ issue opened on May 16 2022 by Frederick Muriuki Muriithi, last updated on May 16 2022 by Frederick Muriuki Muriithi; 1 of 1 tasks done
- Fix Collection Export
✓ issue opened on Apr 20 2022 by Zachary Sloan, last updated on Apr 21 2022 by Zachary Sloan
- Mapping figure can't be horizontally scrolled
✓ issue opened on Apr 20 2022 by Zachary Sloan, last updated on Apr 21 2022 by Zachary Sloan
- DOL group mapping issues
✓ issue opened on Apr 07 2022 by Zachary Sloan, last updated on Apr 20 2022 by Zachary Sloan
- Add an 'Edit Issue' Link to Tissue
✓ issue opened on Mar 24 2022 by Frederick Muriuki Muriithi, last updated on Apr 15 2022 by Arun Isaac
- correlation error: 'NoneType' object is not iterable
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Apr 13 2022 by Alexander Kabui
- Wrong CSV in ITP_10001 longevity dataset
✓ issue opened on Apr 11 2022 by BonfaceKilz, last updated on Apr 12 2022 by BonfaceKilz
- BXD102xBXD077F1 Error
✓ issue opened on Mar 22 2022 by Frederick Muriuki Muriithi, last updated on Apr 07 2022 by Zachary Sloan
- Remove everything elastic search
✓ issue opened on Oct 22 2021 by Pjotr Prins, last updated on Apr 01 2022 by BonfaceKilz
- Hide stale issues in gnbug
✓ issue opened on Jan 31 2022 by Arun Isaac, last updated on Mar 22 2022 by Arun Isaac
- Sort gnbug issues most recent first
✓ issue opened on Jan 31 2022 by Arun Isaac, last updated on Mar 22 2022 by Arun Isaac
- Remove Elastic Search
✓ issue opened on Oct 28 2021 by BonfaceKilz, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Make build green
✓ issue opened on Dec 21 2021 by BonfaceKilz, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- gemma-wrapper has incomplete files
✓ issue opened on Nov 14 2021 by Pjotr Prins, last updated on Feb 17 2022 by Pjotr Prins; 2 of 2 tasks done
- GEMMA GSL ERROR: function value is not finite in brent.c
✓ issue opened on Aug 14 2021 by Pjotr Prins, last updated on Feb 17 2022 by Pjotr Prins
- file upload size limit
✓ issue opened on Feb 16 2022 by jgart, last updated on Feb 16 2022 by jgart
- Designing an issue tracker on gemini
✓ issue opened on Jul 25 2021 by Pjotr Prins, last updated on Feb 02 2022 by Pjotr Prins
- Open notebook directly if full path to notebook file is given
✓ issue opened on Nov 04 2021 by jgart, last updated on Dec 22 2021 by Frederick Muriuki Muriithi
- Nginx forwarding error regarding static assets
✓ issue opened on Nov 10 2021 by jgart, last updated on Dec 22 2021 by Frederick Muriuki Muriithi
- issues/binderlite/add-spinner-for-submit-form.gmi
✓ issue opened on Nov 10 2021 by jgart, last updated on Dec 22 2021 by Frederick Muriuki Muriithi
- Binderlite Notebook Gallery
✓ issue opened on Oct 04 2021 by jgart, last updated on Oct 21 2021 by jgart
- gnbug cat
✓ issue opened on Sep 22 2021 by jgart, last updated on Sep 28 2021 by jgart
- Maybe `gnbug` should be an alias for `gnbug list`
✓ issue opened on Sep 22 2021 by jgart, last updated on Sep 22 2021 by Arun Isaac