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Upload probeset metadata


  • assigned: bonfacem
  • type: bug
  • status: closed

Probeset metadata is the only significant metadata that remains to be uploaded. Uploading using SPARQL'S endpoint (either using CURL or the load-rdf script) doesn't work. As such, I'll have to work out a different way to upload this metadata. Here's the current size of the datasets I'm trying to upload:

bonfacem@tux02:/export3/local/home/bonfacem/dump-genenetwork-database$ ls -lah data/
total 3.2G
drwxr-xr-x 2 bonfacem bonfacem  4.0K Jun 16 08:04 .
drwxr-xr-x 9 bonfacem bonfacem  4.0K Jun 15 07:04 ..
-rw-r--r-- 1 bonfacem bonfacem  1.2G Jun 16 07:48 dump-probeset-0.ttl
-rw-r--r-- 1 bonfacem bonfacem 1014M Jun 16 08:04 dump-probeset-1.ttl
-rw-r--r-- 1 bonfacem bonfacem 1009M Jun 16 08:18 dump-probeset-2.ttl

This has been resolved in:

The public-sparql and genenetwork-development containers were re-built to apply the above changes.

(made with skribilo)