On https://gn2-fred.genenetwork.org the heatmaps fails with a note ("ERROR: undefined"). In the logs, I see "Module 'scipy' has no attribute 'array'" which seems to be due to a change in numpy.
This issue should not be present with python-plotly@5.20.0 but since guix-bioinformatics pins the guix version to `b0b988c41c9e0e591274495a1b2d6f27fcdae15a`, we are not able to pull in newer versions of packages from guix.
Got the following error when I ran the background command manually:
$ export RUST_BACKTRACE=full $ /gnu/store/dp4zq4xiap6rp7h6vslwl1n52bd8gnwm-profile/bin/qtlreaper --geno /home/frederick/genotype_files/genotype/genotype/BXD.geno --n_permutations 1000 --traits /tmp/traits_test_file_n2E7V06Cx7.txt --main_output /tmp/qtlreaper/main_output_NGVW4sfYha.txt --permu_output /tmp/qtlreaper/permu_output_MJnzLbrsrC.txt thread 'main' panicked at src/regression.rs:216:25: index out of bounds: the len is 20 but the index is 20 stack backtrace: 0: 0x61399d77d46d - <unknown> 1: 0x61399d7b5e13 - <unknown> 2: 0x61399d78b649 - <unknown> 3: 0x61399d78f26f - <unknown> 4: 0x61399d78ee98 - <unknown> 5: 0x61399d78f815 - <unknown> 6: 0x61399d77d859 - <unknown> 7: 0x61399d77d679 - <unknown> 8: 0x61399d78f3f4 - <unknown> 9: 0x61399d6f4063 - <unknown> 10: 0x61399d6f41f7 - <unknown> 11: 0x61399d708f18 - <unknown> 12: 0x61399d6f6e4e - <unknown> 13: 0x61399d6f9e93 - <unknown> 14: 0x61399d6f9e89 - <unknown> 15: 0x61399d78e505 - <unknown> 16: 0x61399d6f8d55 - <unknown> 17: 0x75ee2b945bf7 - __libc_start_call_main 18: 0x75ee2b945cac - __libc_start_main@GLIBC_2.2.5 19: 0x61399d6f4861 - <unknown> 20: 0x0 - <unknown>