- Markdown Editing Service: Not Deployed
✓ issue opened on Oct 26 2024 by Frederick Muriuki Muriithi, last updated 3 weeks ago by Frederick Muriuki Muriithi
- AuthorisationError in gn uploader
✓ issue opened on May 14 2025 by Lisso_, last updated 3 weeks ago by Frederick Muriuki Muriithi
- Can't Masquarade as another user as a system admin
✓ issue opened on May 15 2024 by Munyoki Kilyungi, last updated 3 weeks ago by Frederick Muriuki Muriithi
- Link Authentication/Authorisation
✓ issue opened on Jun 24 2024 by Frederick Muriuki Muriithi, last updated 3 weeks ago by Frederick Muriuki Muriithi
- Apps
issue opened on Nov 19 2024 by Pjotr Prins, last updated 4 weeks ago by Pjotr Prins; 33 of 74 tasks done
- CD is slow
issue opened on Jul 20 2025 by Pjotr Prins, last updated on Jul 24 2025 by Pjotr Prins; 2 of 8 tasks done
- guix build gn-uploader: error
✓ issue opened on Mar 13 2024 by Frederick Muriuki Muriithi, last updated on Jun 19 2025 by Pjotr Prins
- Tux02 Production
issue opened on Oct 07 2021 by Pjotr Prins, last updated on Jun 13 2025 by Pjotr Prins; 17 of 22 tasks done
- Penguin2 RAID 5
issue opened on Feb 28 2025 by Pjotr Prins
- Investigate and Fix `rm` Command in `rqtl` Logs
issue opened on Jan 08 2025 by Alexander_Kabui, last updated on Jan 09 2025 by Munyoki Kilyungi; 4 of 6 tasks done
- Fix Broken Global Search UI
issue opened on Jan 07 2025 by Alexander_Kabui, last updated on Jan 07 2025 by Alexander_Kabui; 0 of 2 tasks done
- Python Requests Error in Container
✓ issue opened on Nov 01 2024 by Frederick Muriuki Muriithi, last updated on Nov 07 2024 by Frederick Muriuki Muriithi
- Handle Temporary Directories in the Container
✓ issue opened on Nov 01 2024 by Frederick Muriuki Muriithi, last updated on Nov 05 2024 by Frederick Muriuki Muriithi
- Containerising Production: Issues
✓ issue opened on Oct 26 2024 by Frederick Muriuki Muriithi, last updated on Nov 05 2024 by Frederick Muriuki Muriithi; 1 of 1 tasks done
- Virtuoso: Shutdown Clears Data
✓ issue opened on Oct 28 2024 by Frederick Muriuki Muriithi, last updated on Oct 30 2024 by Frederick Muriuki Muriithi
- Setup Mailing on Tux04
✓ issue opened on Oct 28 2024 by Frederick Muriuki Muriithi, last updated on Oct 28 2024 by Frederick Muriuki Muriithi
- UM-HET3 Timing: Slow
issue opened on Oct 26 2024 by Frederick Muriuki Muriithi, last updated on Oct 26 2024 by Frederick Muriuki Muriithi
- Redirect Users to the Correct URL on Login for GN2
✓ issue opened on Sep 17 2024 by Alexander_Kabui, last updated on Oct 16 2024 by Alexander_Kabui; 2 of 2 tasks done
- GeneNetwork2: Account Registration Error
✓ issue opened on Mar 19 2024 by Frederick Muriuki Muriithi, last updated on Sep 16 2024 by Frederick Muriuki Muriithi
- Reset/Forgot Password Feature for GN2
✓ issue opened on May 15 2024 by Munyoki Kilyungi, last updated on Sep 16 2024 by Frederick Muriuki Muriithi
- GN Markdown Editor Integration
issue opened on Jun 07 2024 by Alexander_Kabui, last updated on Aug 22 2024 by Alexander_Kabui; 9 of 10 tasks done
- Login issues with gn-auth
✓ issue opened on Mar 01 2024 by Pjotr Prins, last updated on Jul 03 2024 by Frederick Muriuki Muriithi
- Problem With Roles: Privilege Escalation
✓ issue opened on Jun 06 2024 by Frederick Muriuki Muriithi, last updated on Jul 03 2024 by Frederick Muriuki Muriithi; 8 of 8 tasks done
- Fallbacks and backups
issue opened on Aug 31 2021 by Pjotr Prins, last updated on Jun 28 2024 by Pjotr Prins; 3 of 25 tasks done
- test1-auth.genenetwork.org Can't Find Templates
✓ issue opened on Mar 02 2024 by Frederick Muriuki Muriithi, last updated on Jun 26 2024 by Frederick Muriuki Muriithi
- Each shepherd service needs its own guix profile.
issue opened on Nov 03 2021 by Efraim Flashner, last updated on Jun 21 2024 by Pjotr Prins
- Re-use JWTs in gn3
✓ issue opened on Apr 30 2024 by Munyoki Kilyungi
- Data Integrity for Table Identifiers
✓ issue opened on Apr 16 2024 by Frederick Muriuki Muriithi, last updated on Apr 17 2024 by Frederick Muriuki Muriithi
- Fallback issues
issue opened on Mar 22 2024 by Pjotr Prins, last updated on Apr 05 2024 by Pjotr Prins; 3 of 6 tasks done
- Unresponsive Virtuoso in CD
✓ issue opened on Apr 02 2024 by Munyoki Kilyungi
- Database: `ProbeSetSE` Schema Bug
issue opened on Mar 22 2024 by Frederick Muriuki Muriithi, last updated on Mar 22 2024 by Frederick Muriuki Muriithi
- AI UI Enhancements
issue opened on Mar 01 2024 by Pjotr Prins; 0 of 3 tasks done
- Read Samples/Cases/Individuals From Database
✓ issue opened on Jan 20 2024 by Frederick Muriuki Muriithi, last updated on Feb 27 2024 by Frederick Muriuki Muriithi
- Troubleshoot response inconsistencies for GN-llm
issue opened on Jan 10 2024 by Alexander_Kabui
- Trait Page Errors on CD
✓ issue opened on Nov 22 2022 by Frederick Muriuki Muriithi, last updated on Dec 18 2023 by Frederick Muriuki Muriithi
- Conflating `dataset_id` with `inbred_set_id`
✓ issue opened on Jul 18 2023 by Frederick Muriuki Muriithi, last updated on Nov 28 2023 by Frederick Muriuki Muriithi
- Octopus sysmaintenance
issue opened on Oct 12 2021 by Pjotr Prins, last updated on Oct 31 2023 by Pjotr Prins; 0 of 8 tasks done
- Modelling Phenotype Data
✓ issue opened on Aug 08 2023 by Munyoki Kilyungi, last updated on Oct 11 2023 by Munyoki Kilyungi
- Decommission machines
issue opened on Oct 06 2021 by Pjotr Prins, last updated on Sep 22 2023 by Pjotr Prins; 11 of 22 tasks done
- Fetch trait data using genofiles
issue opened on Jul 11 2023 by Alexander_Kabui, last updated on Jul 13 2023 by Alexander_Kabui; 2 of 3 tasks done
- Parsing genotyfiles
issue opened on Jul 11 2023 by Alexander_Kabui
- Linking genotype files to datasets
issue opened on Jul 07 2023 by Alexander_Kabui, last updated on Jul 11 2023 by Alexander_Kabui
- Letsencrypt
issue opened on Oct 13 2021 by Pjotr Prins, last updated on Jul 04 2023 by Pjotr Prins; 2 of 5 tasks done
- Branding and front-end-services
issue opened on Jun 14 2023 by Pjotr Prins; 0 of 1 tasks done
- Genenetwork3 Effective UID
✓ issue opened on Jun 05 2023 by Frederick Muriuki Muriithi, last updated on Jun 09 2023 by Frederick Muriuki Muriithi
- Slow query
issue opened on May 27 2023 by Pjotr Prins, last updated on May 29 2023 by Pjotr Prins; 0 of 2 tasks done
- Use "Authorisation Code Flow" for Authentication
✓ issue opened on May 08 2023 by Frederick Muriuki Muriithi, last updated on May 22 2023 by Frederick Muriuki Muriithi
- Migrate User Collections
✓ issue opened on May 08 2023 by Frederick Muriuki Muriithi, last updated on May 22 2023 by Frederick Muriuki Muriithi
- Unable to open new tab for mapping/ correlations with Chrome
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Apr 18 2023 by Munyoki Kilyungi
- Error when fetching SNPs in a search page
✓ issue opened on Sep 28 2022 by Munyoki Kilyungi, last updated on Apr 18 2023 by Munyoki Kilyungi
- Search results presentation
issue opened on Apr 04 2023 by Alexander_Kabui
- Report invalid search queries passed to the search API
issue opened on Feb 15 2023 by Arun Isaac, last updated on Apr 04 2023 by Alexander_Kabui
- Annotation
issue opened on Sep 14 2022 by Pjotr Prins, last updated on Mar 14 2023 by Arun Isaac; 0 of 5 tasks done
- GN1 annotation page broken
issue opened on Dec 23 2022 by Pjotr Prins
- GN1 Pairscan
✓ issue opened on Sep 15 2021 by Pjotr Prins, last updated on Dec 17 2022 by Pjotr Prins
- GN1 github problem
issue opened on Dec 17 2022 by Pjotr Prins
- GN1 annotation page broken
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Dec 17 2022 by Pjotr Prins; 0 of 2 tasks done
- Annotate traits page with metadata from RDF
✓ issue opened on Sep 30 2022 by Munyoki Kilyungi, last updated on Dec 15 2022 by Munyoki Kilyungi; 16 of 16 tasks done
- Correlations: Fewer Results than Expected
issue opened on Nov 22 2022 by Frederick Muriuki Muriithi
- Correlations time out
✓ issue opened on Aug 06 2021 by Pjotr Prins, last updated on Nov 22 2022 by Frederick Muriuki Muriithi; 2 of 3 tasks done
- Global search does not close connections properly (and is slow)
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 14 2022 by Arun Isaac
- Automatically find broken links on GN2
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi; 2 of 2 tasks done
- Search results for SNP looks weird
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi
- Capture Data on the BXDs in RDF
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi
- Using guix-bioinformatics in a channels.scm file
issue opened on Aug 15 2021 by Efraim Flashner, last updated on Oct 09 2022 by Pjotr Prins
- Rebooting the GN production machine(s)
issue opened on Jan 01 2022 by Pjotr Prins, last updated on Oct 06 2022 by Pjotr Prins; 4 of 4 tasks done
- 'TempDataSet' object has no attribute 'query_for_group' (error)
✓ issue opened on Mar 22 2022 by Frederick Muriuki Muriithi, last updated on Sep 28 2022 by Alexander_Kabui
- Failing Tests
✓ issue opened on Aug 03 2022 by Frederick Muriuki Muriithi, last updated on Sep 20 2022 by Alexander_Kabui
- Add track for showing which regions in mouse/rat correspond to human regions to the mapping figure
issue opened on Jul 21 2022 by Zachary Sloan, last updated on Sep 14 2022 by Pjotr Prins
- GN2 Time Machines
issue opened on Aug 19 2022 by Pjotr Prins, last updated on Sep 05 2022 by Alexander_Kabui; 4 of 10 tasks done
- Enable all DataTables to call the same code
issue opened on Jul 26 2022 by Zachary Sloan, last updated on Jul 27 2022 by Zachary Sloan
- Allow analyses to be done between traits from "individuals" groups and their corresponding "main" group
issue opened on Jul 21 2022 by Zachary Sloan
- Add the option to save traits uploaded with the Submit Trait option
issue opened on Jul 19 2022 by Zachary Sloan
- Broken continuous deployment
✓ issue opened on Jul 06 2022 by Arun Isaac, last updated on Jul 11 2022 by Frederick Muriuki Muriithi
- Slow Correlations and UI crashes
✓ issue opened on Oct 18 2021 by BonfaceKilz, last updated on Jul 08 2022 by Alexander_Kabui
- Sheepdog
issue opened on Nov 08 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac; 3 of 17 tasks done
- GN1 Time machines
issue opened on Oct 07 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac
- Add an 'Edit Issue' Link to Tissue
✓ issue opened on Mar 24 2022 by Frederick Muriuki Muriithi, last updated on Apr 15 2022 by Arun Isaac
- Zoomed mapping result are empty for certain traits
issue opened on Apr 11 2022 by Zachary Sloan, last updated on Apr 13 2022 by Zachary Sloan
- correlation error: 'NoneType' object is not iterable
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Apr 13 2022 by Alexander Kabui
- Wrong CSV in ITP_10001 longevity dataset
✓ issue opened on Apr 11 2022 by BonfaceKilz, last updated on Apr 12 2022 by BonfaceKilz
- BXD102xBXD077F1 Error
✓ issue opened on Mar 22 2022 by Frederick Muriuki Muriithi, last updated on Apr 07 2022 by Zachary Sloan
- Adding principal component to collection returns an error
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Apr 07 2022 by Alexander Kabui
- Error when attempt to zoom to a chromosome after mapping a PCA trait
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
- Multi-trait heat map failed
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
- Slow query
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
- Capture state of phenotypes in a HASH
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
- Fetch trait names for phenotypes
issue opened on Mar 22 2022 by Frederick Muriuki Muriithi
- Variant Browser seems to be using mm9
issue opened on Mar 22 2022 by Frederick Muriuki Muriithi
- csv export meta data are not commented out
issue opened on Mar 22 2022 by Frederick Muriuki Muriithi
- Return canned text if notebook description returns none
issue opened on Oct 28 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Integrate styling of app with GN2
issue opened on Oct 28 2021 by jgart, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
- Tux01 hard disk crash
issue opened on Sep 29 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- GN1 Production
issue opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi; 3 of 8 tasks done
- Fix GN1 Network Graph
issue opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Marker covariates implemented wrong in rqtl_wrapper.R
issue opened on Sep 22 2021 by Zachary Sloan, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
- Designing an issue tracker on gemini
✓ issue opened on Jul 25 2021 by Pjotr Prins, last updated on Feb 02 2022 by Pjotr Prins