- Failing Services' Startup
✓ issue opened on Aug 20 2025 by Frederick Muriuki Muriithi, last updated 2 weeks ago by Frederick Muriuki Muriithi
- uACME Error: "urn:ietf:params:acme:error:unauthorized"
✓ issue opened 2 weeks ago by Frederick Muriuki Muriithi, last updated 2 weeks ago by Frederick Muriuki Muriithi
- Genenetwork3 Configurations
✓ issue opened on Jun 15 2023 by Frederick Muriuki Muriithi, last updated 3 weeks ago by Frederick Muriuki Muriithi
- Markdown Editing Service: Not Deployed
✓ issue opened on Oct 26 2024 by Frederick Muriuki Muriithi, last updated 3 weeks ago by Frederick Muriuki Muriithi
- gn-guile: Activations on Production not Running as Expected
✓ issue opened on Aug 15 2025 by Frederick Muriuki Muriithi, last updated 3 weeks ago by Frederick Muriuki Muriithi
- Can't Masquarade as another user as a system admin
✓ issue opened on May 15 2024 by Munyoki Kilyungi, last updated 3 weeks ago by Frederick Muriuki Muriithi
- Remove `bin/genenetwork2` Script
✓ issue opened on Sep 04 2025 by Frederick Muriuki Muriithi, last updated 3 weeks ago by Frederick Muriuki Muriithi; 6 of 6 tasks done
- A Listing of Features and/or Bugs without Dedicated Issues
✓ issue opened on Feb 16 2024 by Frederick Muriuki Muriithi, last updated 3 weeks ago by Frederick Muriuki Muriithi
- Provide Page/Link for/to Uploaded Data
✓ issue opened on Jul 10 2024 by Frederick Muriuki Muriithi, last updated 3 weeks ago by Frederick Muriuki Muriithi
- Link Authentication/Authorisation
✓ issue opened on Jun 24 2024 by Frederick Muriuki Muriithi, last updated 3 weeks ago by Frederick Muriuki Muriithi
- Rework "View-Resource" Page
✓ issue opened on Jul 31 2025 by Frederick Muriuki Muriithi, last updated 3 weeks ago by Frederick Muriuki Muriithi
- R/qtl2 Maps Error
✓ issue opened on May 15 2025 by Frederick Muriuki Muriithi, last updated 3 weeks ago by Frederick Muriuki Muriithi
- Handle OAuth Errors Better
✓ issue opened on Oct 25 2024 by Frederick Muriuki Muriithi, last updated 3 weeks ago by Frederick Muriuki Muriithi
- Spam Entries in Auth (Production)
✓ issue opened on Mar 07 2024 by Munyoki Kilyungi, last updated 3 weeks ago by Frederick Muriuki Muriithi
- Correlations timing out for "UMUTAffy Hippocampus Exon (Feb09) RMA" correlations (and probably some others)
✓ issue opened on Oct 17 2022 by Zachary Sloan, last updated 3 weeks ago by Frederick Muriuki Muriithi
- Implement No-Login Requirement for GNQA
✓ issue opened on Jun 04 2025 by Alexander_Kabui, last updated on Sep 01 2025 by Alexander_Kabui; 4 of 4 tasks done
- Merge GNQA to Production
✓ issue opened on Feb 12 2024 by Alexander_Kabui, last updated on Sep 01 2025 by Alexander_Kabui; 2 of 2 tasks done
- Xapian to Text Transformer
✓ issue opened on Sep 09 2024 by Alexander_Kabui, last updated on Sep 01 2025 by Alexander_Kabui
- E-Mail Verification
✓ issue opened on Jun 04 2024 by Zachary Sloan, last updated on Jun 19 2025 by Pjotr Prins
- Fix Display for the Time Consumed for Correlations
✓ issue opened on Mar 31 2025 by Frederick Muriuki Muriithi, last updated on Mar 31 2025 by Frederick Muriuki Muriithi
- Production Container: `mechanical-rob` Failure
✓ issue opened on Feb 19 2025 by Frederick Muriuki Muriithi, last updated on Mar 10 2025 by Frederick Muriuki Muriithi
- Python Requests Error in Container
✓ issue opened on Nov 01 2024 by Frederick Muriuki Muriithi, last updated on Nov 07 2024 by Frederick Muriuki Muriithi
- Handle Temporary Directories in the Container
✓ issue opened on Nov 01 2024 by Frederick Muriuki Muriithi, last updated on Nov 05 2024 by Frederick Muriuki Muriithi
- Containerising Production: Issues
✓ issue opened on Oct 26 2024 by Frederick Muriuki Muriithi, last updated on Nov 05 2024 by Frederick Muriuki Muriithi; 1 of 1 tasks done
- Virtuoso: Shutdown Clears Data
✓ issue opened on Oct 28 2024 by Frederick Muriuki Muriithi, last updated on Oct 30 2024 by Frederick Muriuki Muriithi
- Redirect Users to the Correct URL on Login for GN2
✓ issue opened on Sep 17 2024 by Alexander_Kabui, last updated on Oct 16 2024 by Alexander_Kabui; 2 of 2 tasks done
- Cleanup GN2 Base HTML File
✓ issue opened on Sep 23 2024 by Alexander_Kabui, last updated on Oct 16 2024 by Alexander_Kabui; 3 of 3 tasks done
- Redesign Global Search Design
✓ issue opened on Sep 26 2024 by Alexander_Kabui, last updated on Oct 16 2024 by Alexander_Kabui; 2 of 2 tasks done
- Quality Control of Data in Uploaded R/qtl2 Bundles
✓ issue opened on Feb 02 2024 by Frederick Muriuki Muriithi, last updated on Sep 16 2024 by Frederick Muriuki Muriithi; 10 of 15 tasks done
- gn-uploader container: Running wrong genenetwork2
✓ issue opened on Mar 18 2024 by Frederick Muriuki Muriithi, last updated on Sep 16 2024 by Frederick Muriuki Muriithi
- Send out Confimation Emails on Registration
✓ issue opened on Feb 27 2024 by Frederick Muriuki Muriithi, last updated on Sep 16 2024 by Frederick Muriuki Muriithi
- GeneNetwork2: Account Registration Error
✓ issue opened on Mar 19 2024 by Frederick Muriuki Muriithi, last updated on Sep 16 2024 by Frederick Muriuki Muriithi
- Configurations
✓ issue opened on Jun 05 2023 by Frederick Muriuki Muriithi, last updated on Sep 16 2024 by Frederick Muriuki Muriithi
- Haley-Knott Regression Mapping Error
✓ issue opened on Sep 11 2024 by Frederick Muriuki Muriithi
- Refactoring gn-llm code and adding test modules
✓ issue opened on Jan 17 2024 by Alexander_Kabui, last updated on Sep 09 2024 by Alexander_Kabui
- Integrating gn-auth with gn-llm
✓ issue opened on Jan 10 2024 by Alexander_Kabui, last updated on Sep 09 2024 by Alexander_Kabui
- Fetch Pubmed data to GNQA
✓ issue opened on Feb 12 2024 by Alexander_Kabui, last updated on Sep 09 2024 by Alexander_Kabui; 6 of 6 tasks done
- GN-LLM Integration
issue opened on Dec 12 2023 by Alexander_Kabui, last updated on Sep 09 2024 by Alexander_Kabui; 3 of 3 tasks done
- Implement Reference Rating for gn-llm
✓ issue opened on Jan 11 2024 by Alexander_Kabui, last updated on Sep 09 2024 by Alexander_Kabui; 2 of 2 tasks done
- Implementing Efficient Database Caching for Query Responses in GN-LLM system
✓ issue opened on Jan 17 2024 by Alexander_Kabui, last updated on Sep 09 2024 by Alexander_Kabui; 3 of 3 tasks done
- Get GNQA Ready for evaluation
issue opened on Mar 21 2024 by Solomon Shelby, last updated on Jul 24 2024 by Solomon Shelby; 2 of 2 tasks done
- Login issues with gn-auth
✓ issue opened on Mar 01 2024 by Pjotr Prins, last updated on Jul 03 2024 by Frederick Muriuki Muriithi
- Problem With Roles: Privilege Escalation
✓ issue opened on Jun 06 2024 by Frederick Muriuki Muriithi, last updated on Jul 03 2024 by Frederick Muriuki Muriithi; 8 of 8 tasks done
- Fix Flash Messages
✓ issue opened on Jan 05 2024 by Frederick Muriuki Muriithi, last updated on Jul 03 2024 by Frederick Muriuki Muriithi
- Move Uploader to tux02
✓ issue opened on Mar 12 2024 by Frederick Muriuki Muriithi, last updated on Jul 03 2024 by Frederick Muriuki Muriithi; 3 of 3 tasks done
- gn-uploader: Resume Upload
✓ issue opened on Jun 24 2024 by Frederick Muriuki Muriithi, last updated on Jul 03 2024 by Frederick Muriuki Muriithi; 4 of 4 tasks done
- Check Genotypes in the Database for R/qtl2 Uploads
✓ issue opened on Jun 26 2024 by Frederick Muriuki Muriithi, last updated on Jul 01 2024 by Frederick Muriuki Muriithi
- Implement "Refresh Token" Feature for JWTs
✓ issue opened on Apr 26 2024 by Frederick Muriuki Muriithi, last updated on Jun 26 2024 by Frederick Muriuki Muriithi
- test1-auth.genenetwork.org Can't Find Templates
✓ issue opened on Mar 02 2024 by Frederick Muriuki Muriithi, last updated on Jun 26 2024 by Frederick Muriuki Muriithi
- issues/sorting-correlation-nan-vals.gmi
✓ issue opened on Nov 28 2022 by AlexanderKabui, last updated on May 29 2024 by Alexander_Kabui
- GNQA UI Enhancements
✓ issue opened on Feb 12 2024 by Alexander_Kabui, last updated on May 29 2024 by Alexander_Kabui; 1 of 1 tasks done
- Edit OAuth2 Clients
✓ issue opened on Apr 24 2024 by Frederick Muriuki Muriithi, last updated on May 02 2024 by Frederick Muriuki Muriithi
- Handle Invalid Login Errors Correctly
✓ issue opened on Apr 24 2024 by Frederick Muriuki Muriithi, last updated on Apr 26 2024 by Frederick Muriuki Muriithi
- Data Integrity for Table Identifiers
✓ issue opened on Apr 16 2024 by Frederick Muriuki Muriithi, last updated on Apr 17 2024 by Frederick Muriuki Muriithi
- Remove externally loaded JS
✓ issue opened on Apr 18 2022 by BonfaceKilz, last updated on Feb 28 2024 by Alexander_Kabui; 3 of 3 tasks done
- Read Samples/Cases/Individuals From Database
✓ issue opened on Jan 20 2024 by Frederick Muriuki Muriithi, last updated on Feb 27 2024 by Frederick Muriuki Muriithi
- QC: Fix Integration Tests
✓ issue opened on Jan 09 2024 by Frederick Muriuki Muriithi, last updated on Feb 27 2024 by Frederick Muriuki Muriithi
- Fix Opaque Errors
✓ issue opened on Feb 12 2024 by Frederick Muriuki Muriithi, last updated on Feb 27 2024 by Frederick Muriuki Muriithi
- Upload Strains
✓ issue opened on Dec 06 2023 by Frederick Muriuki Muriithi, last updated on Feb 27 2024 by Frederick Muriuki Muriithi; 5 of 5 tasks done
- Rework Test: Remove redis as Test Dependency
✓ issue opened on Oct 27 2023 by Frederick Muriuki Muriithi, last updated on Feb 27 2024 by Frederick Muriuki Muriithi
- Temp traits don't seem to be handled by the authorization system
✓ issue opened on Jul 28 2023 by Zachary Sloan, last updated on Feb 27 2024 by Frederick Muriuki Muriithi
- Rework Resources
✓ issue opened on Sep 06 2023 by Frederick Muriuki Muriithi, last updated on Feb 27 2024 by Frederick Muriuki Muriithi; 2 of 3 tasks done
- GN3 API Configurations on CD
✓ issue opened on Jan 08 2024 by Alexander_Kabui, last updated on Jan 08 2024 by Alexander_Kabui
- Trait Page Errors on CD
✓ issue opened on Nov 22 2022 by Frederick Muriuki Muriithi, last updated on Dec 18 2023 by Frederick Muriuki Muriithi
- Make Existing Data Public View by Default
✓ issue opened on May 24 2023 by Frederick Muriuki Muriithi, last updated on Dec 18 2023 by Frederick Muriuki Muriithi
- Import Collections Pop-up Bug
✓ issue opened on Dec 12 2023 by Zachary Sloan, last updated on Dec 18 2023 by Frederick Muriuki Muriithi
- Collections Count Bug
✓ issue opened on Dec 18 2023 by Frederick Muriuki Muriithi, last updated on Dec 18 2023 by Frederick Muriuki Muriithi
- Clean up Authorisation
✓ issue opened on Nov 19 2021 by BonfaceKilz, last updated on Dec 04 2023 by Frederick Muriuki Muriithi; 4 of 4 tasks done
- Buggy Use of `urllib.parse.urljoin`
✓ issue opened on Jul 25 2022 by Frederick Muriuki Muriithi, last updated on Nov 28 2023 by Frederick Muriuki Muriithi
- Big File Upload Fails
✓ issue opened on Jan 17 2023 by Frederick Muriuki Muriithi, last updated on Nov 28 2023 by Frederick Muriuki Muriithi
- Add to Collection Error
✓ issue opened on Oct 09 2023 by Frederick Muriuki Muriithi, last updated on Nov 28 2023 by Frederick Muriuki Muriithi
- Rewrite qc and qc-uploads in Python3
✓ issue opened on Apr 11 2022 by Frederick Muriuki Muriithi, last updated on Nov 28 2023 by Frederick Muriuki Muriithi
- Remove bcrypt as a Dependency
✓ issue opened on Oct 27 2023 by Frederick Muriuki Muriithi, last updated on Nov 28 2023 by Frederick Muriuki Muriithi
- Phenotype Correlation Error
✓ issue opened on Sep 28 2022 by Zachary Sloan, last updated on Nov 28 2023 by Frederick Muriuki Muriithi
- Invalid Token Error
✓ issue opened on Aug 25 2023 by Zachary Sloan, last updated on Aug 31 2023 by Frederick Muriuki Muriithi
- Implementing parallel correlation with rust
✓ issue opened on Apr 25 2022 by Alexander Kabui, last updated on Jul 11 2023 by Alexander_Kabui; 12 of 15 tasks done
- Genenetwork3 Effective UID
✓ issue opened on Jun 05 2023 by Frederick Muriuki Muriithi, last updated on Jun 09 2023 by Frederick Muriuki Muriithi
- Build Registration Page for OAuth2 Clients
✓ issue opened on Dec 22 2022 by Frederick Muriuki Muriithi, last updated on May 30 2023 by Frederick Muriuki Muriithi
- Enable User Masquerade
✓ issue opened on May 22 2023 by Frederick Muriuki Muriithi, last updated on May 23 2023 by Frederick Muriuki Muriithi
- Use "Authorisation Code Flow" for Authentication
✓ issue opened on May 08 2023 by Frederick Muriuki Muriithi, last updated on May 22 2023 by Frederick Muriuki Muriithi
- Migrate User Collections
✓ issue opened on May 08 2023 by Frederick Muriuki Muriithi, last updated on May 22 2023 by Frederick Muriuki Muriithi
- Unable to open new tab for mapping/ correlations with Chrome
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Apr 18 2023 by Munyoki Kilyungi
- Coupling current_app and db_utils
✓ issue opened on Apr 04 2023 by Frederick Muriuki Muriithi, last updated on Apr 15 2023 by Frederick Muriuki Muriithi
- Add search syntax hints to web UI
✓ issue opened on Feb 15 2023 by Arun Isaac, last updated on Apr 04 2023 by Alexander_Kabui
- Enter key in global search field
✓ issue opened on Feb 13 2023 by Arun Isaac, last updated on Apr 04 2023 by Alexander_Kabui
- Bug when a user quickly clicks "Compute" for mapping on the trait page
issue opened on Feb 06 2023 by Zachary Sloan, last updated on Feb 13 2023 by Zachary Sloan
- metadata caching bug
✓ issue opened on Mar 18 2022 by Alexander Kabui, last updated on Dec 23 2022 by Pjotr Prins; 2 of 2 tasks done
- GN1 annotation page broken
issue opened on Dec 23 2022 by Pjotr Prins
- Do not conflict with 'random' module
✓ issue opened on Dec 20 2022 by Arun Isaac, last updated on Dec 21 2022 by Frederick Muriuki Muriithi
- Materialised Views for Correlations
✓ issue opened on Oct 19 2022 by Frederick Muriuki Muriithi, last updated on Dec 19 2022 by Frederick Muriuki Muriithi
- GN1 annotation page broken
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Dec 17 2022 by Pjotr Prins; 0 of 2 tasks done
- Remove Extra Partial Correlations Options
✓ issue opened on May 16 2022 by Frederick Muriuki Muriithi, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Correlations time out
✓ issue opened on Aug 06 2021 by Pjotr Prins, last updated on Nov 22 2022 by Frederick Muriuki Muriithi; 2 of 3 tasks done
- Correlations are wrongly always using all samples
✓ issue opened on Oct 21 2022 by Zachary Sloan, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Correlations fail for at least some ProbeSet datasets (as the target dataset)
✓ issue opened on Oct 17 2022 by Zachary Sloan, last updated on Nov 22 2022 by Frederick Muriuki Muriithi
- Run Correlations in External Process
✓ issue opened on Oct 19 2022 by Frederick Muriuki Muriithi, last updated on Oct 31 2022 by Frederick Muriuki Muriithi
- Global search does not close connections properly (and is slow)
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 14 2022 by Arun Isaac
- Automatically find broken links on GN2
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi; 2 of 2 tasks done
- Search results for SNP looks weird
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi
- Capture Data on the BXDs in RDF
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi
- 'TempDataSet' object has no attribute 'query_for_group' (error)
✓ issue opened on Mar 22 2022 by Frederick Muriuki Muriithi, last updated on Sep 28 2022 by Alexander_Kabui
- Failing Tests
✓ issue opened on Aug 03 2022 by Frederick Muriuki Muriithi, last updated on Sep 20 2022 by Alexander_Kabui
- Broken continuous deployment
✓ issue opened on Jul 06 2022 by Arun Isaac, last updated on Jul 11 2022 by Frederick Muriuki Muriithi
- Redirect HTTP to HTTPS
✓ issue opened on Jul 31 2021 by Arun Isaac, last updated on Jun 24 2022 by Frederick Muriuki Muriithi
- Improve Menu Generation and Move it to GN3
✓ issue opened on May 16 2022 by Frederick Muriuki Muriithi, last updated on Jun 23 2022 by Frederick Muriuki Muriithi; 2 of 3 tasks done
- Add "Target" (Y) Column in Partial Correlations Selection Table
✓ issue opened on Apr 22 2022 by Frederick Muriuki Muriithi, last updated on May 26 2022 by Frederick Muriuki Muriithi
- correlation error: 'NoneType' object is not iterable
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Apr 13 2022 by Alexander Kabui
- BXD102xBXD077F1 Error
✓ issue opened on Mar 22 2022 by Frederick Muriuki Muriithi, last updated on Apr 07 2022 by Zachary Sloan
- Adding principal component to collection returns an error
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Apr 07 2022 by Alexander Kabui
- Error when attempt to zoom to a chromosome after mapping a PCA trait
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
- Multi-trait heat map failed
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
- Slow query
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
- Fetch trait names for phenotypes
issue opened on Mar 22 2022 by Frederick Muriuki Muriithi
- Variant Browser seems to be using mm9
issue opened on Mar 22 2022 by Frederick Muriuki Muriithi
- csv export meta data are not commented out
issue opened on Mar 22 2022 by Frederick Muriuki Muriithi
- Remove Elastic Search
✓ issue opened on Oct 28 2021 by BonfaceKilz, last updated on Mar 16 2022 by Frederick Muriuki Muriithi