- GN1 annotation page broken
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Dec 17 2022 by Pjotr Prins; 0 of 2 tasks done
...in GN1
is broken. An exception stack trace is displayed, instead of the annotations page content.
## Info
Lily runs a PHP from 2006(!)
PHP 5.1.6 (cli) (built: Mar 18 2014 20:48:55)
Copyright (c) 1997-...
- Search results for SNP looks weird
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi
...in the past:
=> https://user-images.githubusercontent.com/11820306/82554424-8e0ac600-9b6e-11ea-9a50-f53506eb44a5.png Screen Shot 2020-05-20 at 10 01 10 PM
Here's how it looks like now:
https://user-...
- Fetch trait names for phenotypes
issue opened on Mar 22 2022 by Frederick Muriuki Muriithi
...as CSV via the web interface includes the following header information:
```
Record ID,10620
Symbol,WMZTrgtQuadTime
Description,"Central nervous system, behavior, learning and memory: Morris water maze...
- GN1 annotation page broken
issue opened on Dec 23 2022 by Pjotr Prins
.../421 From GitHub
=> http://gn1.genenetwork.org/webqtl/main.py?FormID=annotation The annotations page in GN1
is broken. An exception stack trace is displayed, instead of the annotations page content.
- Variant Browser seems to be using mm9
issue opened on Mar 22 2022 by Frederick Muriuki Muriithi
...in mm9 (see screenshot).
The example is for a search for 'Snx6' (chr12 54.746356 - 54.795662).
=> https://user-images.githubusercontent.com/35666678/119680694-b6906480-be41-11eb-9070-9f4c2dffb499.png...
- Global search does not close connections properly (and is slow)
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 14 2022 by Arun Isaac
...-08-15 2:53:58 140273206434560 [Warning] Aborted connection 45219 to db: 'db_webqtl' user: 'webqtlout' host: '127.0.0.1' (CLOSE_CONNECTION)
```
generating 6Mb of log file info.
In fact, every row in...
- Capture Data on the BXDs in RDF
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi
...in GN related to BXD and addiction?
* What experiments are in GN on addiction related genes?
* What publications are in GN related to addiction and published after 2010?
We want to make search easy...
- Error when attempt to zoom to a chromosome after mapping a PCA trait
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
.../flask/app.py", line 1639, in full_dispatch_request
rv = self.dispatch_request()
File "/usr/local/guix-profiles/gn-latest-20181119/lib/python2.7/site-packages/flask/app.py", line 1625, in...
- Automatically find broken links on GN2
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi; 2 of 2 tasks done
.../app.py", line 1926, in dispatch_request
self.raise_routing_exception(req)
File "/usr/local/guix-profiles/gn-latest-20200513/lib/python2.7/site-packages/flask/app.py", line 1908, in...
- Adding principal component to collection returns an error
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Apr 07 2022 by Alexander Kabui
.../app.py", line 1950, in full_dispatch_request
rv = self.dispatch_request()
File "/usr/local/guix-profiles/gn-latest-20201216/lib/python3.8/site-packages/flask/app.py", line 1936, in...
- 'TempDataSet' object has no attribute 'query_for_group' (error)
✓ issue opened on Mar 22 2022 by Frederick Muriuki Muriithi, last updated on Sep 28 2022 by Alexander_Kabui
.../data_set.py", line 334, in init
dataset.query_for_group)
Hi Rob and Zachary,
Thanks for getting back so quickly. There is no urgency for me. I managed
to upload the trait as a batch file in the old...
- correlation error: 'NoneType' object is not iterable
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Apr 13 2022 by Alexander Kabui
...Feb 19, 2020)
'NoneType' object is not iterable (error)
File "/export/local/home/gn2/production/gene/wqflask/wqflask/correlation/show_corr_results.py", line 473, in process_samples
for sample in...
- csv export meta data are not commented out
issue opened on Mar 22 2022 by Frederick Muriuki Muriithi
...45-60 min after injection in an activity chamber for males [n beam breaks]"
"Authors: Philip VM, Ansah TA, Blaha CD, Cook MN, Hamre KM, Lariviere WR, Matthews DB, Mittleman G, Goldowitz D, Chesler EJ"...
- Unable to open new tab for mapping/ correlations with Chrome
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Apr 18 2023 by Munyoki Kilyungi
- Multi-trait heat map failed
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
...to Ap3m2 in the hippocampus.
Selected "Heat Map"
```
GeneNetwork tux01:gene:2.11-rc2-production-2abbf82b4 http://gn2.genenetwork.org/heatmap (11:25AM UTC Sep 17, 2019)
reaper: the length of the strain...
- BXD102xBXD077F1 Error
✓ issue opened on Mar 22 2022 by Frederick Muriuki Muriithi, last updated on Apr 07 2022 by Zachary Sloan
.../612 From GitHub
> Hi,
>
> There is an error when I click on Compute in Calculate Correlations. It does not load the correlations. This is the error:
> GeneNetwork tux01:gene:2.11-rc2-testing-c16e361c4...