- Enumerating all QC checks
✓ issue opened on Nov 19 2021 by jgart, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
...Enumerating all QC checks
We need to enumerate all QC checks and platforms that we want to test against.
## Tags
* assigned: fredm, jgart, arthur
* status: closed
* type: feature-request
* priority...
- Big File Upload Fails
✓ issue opened on Jan 17 2023 by Frederick Muriuki Muriithi, last updated on Nov 28 2023 by Frederick Muriuki Muriithi
...priority: high
* type: bug
* status: closed, completed
* keywords: qc, quality control
## Description
Trying to upload big files (>= 500MB) fails quietly, dropping the user back to the home page.
- Upload Strains
✓ issue opened on Dec 06 2023 by Frederick Muriuki Muriithi, last updated on Feb 27 2024 by Frederick Muriuki Muriithi; 5 of 5 tasks done
...zachs, zsloan, acenteno
* priority: high
* type: feature-request
* keywords: QC, quality control, strains, gn-uploader
## Description
Currently, the uploader simply fails when it encounters unknown...
- UI Design
✓ issue opened on Dec 01 2021 by jgart, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
...look like."
> ProbeSetID Strains ...
"Inbred Set ID 1 is the same as BXD"
> These are the strains: ...
## Tags
* assigned: fredm, jgart
* type: feature-request
* status: closed
* priority: medium...
- QC: Fix Integration Tests
✓ issue opened on Jan 09 2024 by Frederick Muriuki Muriithi, last updated on Feb 27 2024 by Frederick Muriuki Muriithi
...fredm
* priority: medium
* status: closed, completed
* keywords: quality control, qc, tests, gn-uploader
* type: bug
## Description
Tests that require that Redis be present in order to run, fail due...
- Quality Control Checks
✓ issue opened on Nov 17 2021 by jgart, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
...Phenotypes for normality with Shapiro-Wilk Test.
11. Check for annotations file.
12. Check for CRLF.
13. Check for UTF-8 encoding.
## Tags
* assigned: fredm, jgart
* type: feature-request
* priority...
- Read Samples/Cases/Individuals From Database
✓ issue opened on Jan 20 2024 by Frederick Muriuki Muriithi, last updated on Feb 27 2024 by Frederick Muriuki Muriithi
Read Samples/Cases/Individuals From Database
## Tags
* type: bug
* priority: critical
* assigned: fredm, acenteno
* keywords: QC, quality control, samples, strains, cases, gn-uploader...
- Quality Control Project
✓ issue opened on Nov 19 2021 by Arthur Centeno, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
...too. That would allow it to
be run from R and Python and Jupyter notebooks. Make it part of GN3.
The tricky part is still how the data is handled in escrow.
## Tags
* assigned: fredm, jgart
* priority...
- Quality Control of Data in Uploaded R/qtl2 Bundles
✓ issue opened on Feb 02 2024 by Frederick Muriuki Muriithi, last updated on Sep 16 2024 by Frederick Muriuki Muriithi; 10 of 15 tasks done
...priority: medium
* keywords: quality control, QC, R/qtl2 bundle
## Description
Currently (2024-02-02T05:41+03:00UTC), the code simply allows the upload of data, doing the bare minimum in terms...
- Rewrite qc and qc-uploads in Python3
✓ issue opened on Apr 11 2022 by Frederick Muriuki Muriithi, last updated on Nov 28 2023 by Frederick Muriuki Muriithi
...type: rewrite
* priority: high
* assigned: fredm
* status: closed, completed
* keywords: quality control
## Description
Since the quality control application will mostly be maintained outside active...