- Slow query
issue opened on May 27 2023 by Pjotr Prins, last updated on May 29 2023 by Pjotr Prins; 0 of 2 tasks done
Slow query
Essentially two tables were utf8 (= utf8mb3). The others are utf8mb4. When comparing text fields mariadb can't optimize because it is translating utf8mb3 for every comparison. Changing...
- Annotate traits page with metadata from RDF
✓ issue opened on Sep 30 2022 by Munyoki Kilyungi, last updated on Dec 15 2022 by Munyoki Kilyungi; 16 of 16 tasks done
...query for the trait:
```
PREFIX gn: <http://genenetwork.org/>
SELECT ?name ?dataset ?dataset_group ?title ?summary ?aboutTissue ?aboutPlatform ?aboutProcessing
WHERE {
?dataset gn:accessionId "GN112"...
- AI UI Enhancements
issue opened on Mar 01 2024 by Pjotr Prins; 0 of 3 tasks done
...GN searched for the term(s) "shh" in 754 datasets and 39,765,944 traits across 10 species
and found 1210 results that match your query.
You can filter these results by adding key words in the fields...
- rewrite sampledata fetching with genofiles using scheme
issue opened on Jul 19 2023 by Alexander_Kabui, last updated on Jul 26 2023 by Alexander_Kabui; 2 of 6 tasks done
.../data-vault-2
### TODOS
* [x] reading the genofile
* [x] parsing the genofile to obtain the sample names,metadata
* [] adding unit tests for the module
* [] query statements fetch sampledata...
- Add track for showing which regions in mouse/rat correspond to human regions to the mapping figure
issue opened on Jul 21 2022 by Zachary Sloan, last updated on Sep 14 2022 by Pjotr Prins
...showing homology across mouse/human/maybe rat (done for mouse, won't be hard to also enable for other species)
[ ] Make it display an arrow depending on the strand (whether the query strand matches...
- GN1 Production
issue opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi; 3 of 8 tasks done
...pjotrp, zachs, robw
## List of outstanding issues
(see also E-mail Rob 14 Sep 2021)
* [ ] Fix annotating metadata - or do we have GN2 alternative?
=> gn1-slowness.gmi [.] Clean up tmp dirs with CRON...
- Fallback issues
issue opened on Mar 22 2024 by Pjotr Prins, last updated on Apr 05 2024 by Pjotr Prins; 3 of 6 tasks done
...prepare_url
scheme, auth, host, port, path, query, fragment = parse_url(url)
File "/gnu/store/a39cgbdawj9vp24nsz9q25sf9g5vda7c-profile/lib/python3.10/site-packages/urllib3/util/url.py", line 397...