- Delete Rejected Diffs from Database
✓ issue opened on Jul 25 2023 by Frederick Muriuki Muriithi, last updated on Jul 25 2023 by Frederick Muriuki Muriithi
...type: feature request
* status: closed
* assigned: fredm
* keywords: editing, metadata audit
* priority: high
## Description
The rejected diffs will be maintained, but will simply not be shown.
- Replace Redis with SQL
issue opened 7 weeks ago by Frederick Muriuki Muriithi
...-request, feature request
* keywords: gn-uploader, uploader, redis, sqlite, sqlite3
## Description
We currently (as of 2024-06-27) use Redis for tracking any asynchronous jobs (e.g. QC on uploaded...
- Provide Page/Link for/to Uploaded Data
issue opened on Jul 10 2024 by Frederick Muriuki Muriithi
...feature request, feature-request
* keywords: gn-uploader, uploader, data dashboard
## Description
Once a user has uploaded their data, provide them with a landing page/dashboard for the data they...
- Clean up Authorisation
✓ issue opened on Nov 19 2021 by BonfaceKilz, last updated on Dec 04 2023 by Frederick Muriuki Muriithi; 4 of 4 tasks done
...-mask and default-mask: "data", "metadata", "admin". Otherwise, a hash-ref error will be thrown: On this regard, the documentation for gn-proxy should be updated since it's abit misleading (this hasn't...
- Feature Request: Create Test Accounts
issue opened on Sep 16 2024 by Frederick Muriuki Muriithi, last updated on Sep 17 2024 by Frederick Muriuki Muriithi
Feature Request: Create Test Accounts
## Tags
* assigned: fredm, alex
* status: open
* type: feature request, feature-request
* priority: medium
* keywords: gn-auth, auth, test accounts...
- Prevent Weak Passwords
issue opened on Feb 27 2024 by Frederick Muriuki Muriithi
...-request, feature request
## Description
=> https://matrix.to/#/!mBYtTotZGiPpHmjJnI:matrix.org/$yaw0uk-JyHGBC8Jw-b2I1VhGoaWwNEO_eOiSAO8RSDs?via=matrix.org
> pjotrp
> how do we prevent weak passwords...
- Link Authentication/Authorisation
issue opened on Jun 24 2024 by Frederick Muriuki Muriithi
...priority: critical
* type: feature request, feature-request
* keywords: gn-uploader, gn-auth, authorisation, authentication, uploader, upload
## Description
The last chain in the link to the uploads...
- Send out Confimation Emails on Registration
✓ issue opened on Feb 27 2024 by Frederick Muriuki Muriithi, last updated on Sep 16 2024 by Frederick Muriuki Muriithi
...feature request, feature-request
* keywords: gn-auth, email, user registration, email confirmation
## Description
Send out a emails to confirm that the emails users provide are valid. Probably add...
- Show Last Edited
issue opened on Jul 24 2023 by Frederick Muriuki Muriithi
...request
* priority: medium
* assigned: fredm
* keywords: editing
* status: open
## Description
Following the GNSoC Plenary meeting of Thursday, 20 July 2023, a request was made to add a "Edited by ...
- Enable User Masquerade
✓ issue opened on May 22 2023 by Frederick Muriuki Muriithi, last updated on May 23 2023 by Frederick Muriuki Muriithi
...request
## Description
To enable debug of issues, or to support some user request, we need to build in a masquerade feature to enable the system admin to masquerade as a particular user and perform...
- gn-uploader: Resume Upload
✓ issue opened on Jun 24 2024 by Frederick Muriuki Muriithi, last updated on Jul 03 2024 by Frederick Muriuki Muriithi; 4 of 4 tasks done
...flisso
* type: feature request, feature-request
* keywords: gn-uploader, uploader, upload, resume upload
## Description
If a user is uploading a particularly large file, we might need to provide...
- New Privileges: Samples Ordering
issue opened on Sep 19 2024 by Frederick Muriuki Muriithi
...-request, feature request
* keywords: gn-auth, auth, privileges, samples, ordering
## Description
From the email thread:
```
Regarding the order of samples, it can basically be whatever we decide...
- Sort by Attributes
✓ issue opened on May 31 2024 by Frederick Muriuki Muriithi, last updated on May 31 2024 by Zachary Sloan
...-request, feature request
* priority: high
* status: closed
* keywords: genenetwork2, sorting, attributes
## Description
From the email:
> This trait:
>
> https://genenetwork.org/show_trait?trait_id...
- Render images in tissue web output
✓ issue opened on Apr 20 2022 by Arun Isaac, last updated on Jul 06 2022 by Arun Isaac
...request
* assigned: aruni
Links in gemtext that point to images should render as images rather than as links. This way it will be possible to inline images in issues.
tissue now has its own issue...
- Show "Edit" Button for All Users
✓ issue opened on Jul 24 2023 by Frederick Muriuki Muriithi, last updated on Jul 24 2023 by Frederick Muriuki Muriithi
...feature request
* assigned: fredm
* priority: high
* keywords: editing
* status: closed
## Description
Show the "Edit" button for all users, but only allow users with the appropriate permissions only...
- Use "Authorisation Code Flow" for Authentication
✓ issue opened on May 08 2023 by Frederick Muriuki Muriithi, last updated on May 22 2023 by Frederick Muriuki Muriithi
...feature request, improvement
## Description
We use OAuth2 for our auth(entic|oris)ation system.
Currently, the system is making use of the "Password Grant Flow"[0] which was easy to implement and use...
- Paginate Resources Page
issue opened on Jul 27 2023 by Frederick Muriuki Muriithi
...request
## Description
Some of the Resources have too many data items linked, which leads to the page freezing when loaded.
Pagination will help aleviate the issue in those situations.
We also need...
- Build Registration Page for OAuth2 Clients
✓ issue opened on Dec 22 2022 by Frederick Muriuki Muriithi, last updated on May 30 2023 by Frederick Muriuki Muriithi
...authorisation, oauth2
* type: feature request
## Description
There is a need to register the OAuth2 clients that users can use to access the GN3 service with the new auth system.
Fixed with commits...
- Temporary Traits Access Concerns
issue opened on Aug 03 2023 by Frederick Muriuki Muriithi
...request
* priority: medium
* status: open
* assigned: fredm, zachs
* keywords: temp traits, temporary traits, access control
## Description
The temporary traits feature allows users to quickly upload...
- Rework Resources
✓ issue opened on Sep 06 2023 by Frederick Muriuki Muriithi, last updated on Feb 27 2024 by Frederick Muriuki Muriithi; 2 of 3 tasks done
...refactor, feature request, design change
* keywords: auth, authorisation, resources, design change, gn-auth
## Description
The authorisation system uses the idea of "Resources" as its most basic...
- Migrate User Accounts from Redis to new Auth DB
✓ issue opened on Dec 22 2022 by Frederick Muriuki Muriithi, last updated on May 22 2023 by Frederick Muriuki Muriithi
...authorisation, oauth2
* type: feature request
## Description
After some discussion, this issue was deemed unnecessary.
Users will have to register anew and their access details reconfirmed.
- Quality Control of Data in Uploaded R/qtl2 Bundles
✓ issue opened on Feb 02 2024 by Frederick Muriuki Muriithi, last updated on Sep 16 2024 by Frederick Muriuki Muriithi; 10 of 15 tasks done
...request
* priority: medium
* keywords: quality control, QC, R/qtl2 bundle
## Description
Currently (2024-02-02T05:41+03:00UTC), the code simply allows the upload of data, doing the bare minimum...