- Rework Resources
✓ issue opened on Sep 06 2023 by Frederick Muriuki Muriithi, last updated on Feb 27 2024 by Frederick Muriuki Muriithi; 2 of 3 tasks done
...feature request, design change
* keywords: auth, authorisation, resources, design change, gn-auth
## Description
The authorisation system uses the idea of "Resources" as its most basic model: users...
- Build Registration Page for OAuth2 Clients
✓ issue opened on Dec 22 2022 by Frederick Muriuki Muriithi, last updated on May 30 2023 by Frederick Muriuki Muriithi
...com/genenetwork/genenetwork3/commit/0b0da1783bc701e74a1972869bdb221a3c9a6b2a
## Related Topic(s)
=> /topics/authentication/authentication-authorisation-design Authentication/authorisation design
- Migrate User Accounts from Redis to new Auth DB
✓ issue opened on Dec 22 2022 by Frederick Muriuki Muriithi, last updated on May 22 2023 by Frederick Muriuki Muriithi
where both ```<user-id:UUID>``` values are the same.
## Related Topic(s)
=> /topics/authentication/authentication-authorisation-design Authentication/authorisation design
- Feature Request: Create Test Accounts
issue opened on Sep 16 2024 by Frederick Muriuki Muriithi, last updated on Sep 17 2024 by Frederick Muriuki Muriithi
...-read for all public data: mostly easy.
* Forgot Password: If such users request a password change, what happens? Password changes requires emails to be sent out with a time-sensitive token. The emails...
- Temporary Traits Access Concerns
issue opened on Aug 03 2023 by Frederick Muriuki Muriithi
...achive this are:
* Change the names to make them hard to guess - maybe use hashes
* Use the auth system to control access to the traits in a robust way
These pathways are not mutually exclusive, which...
- Clean up Authorisation
✓ issue opened on Nov 19 2021 by BonfaceKilz, last updated on Dec 04 2023 by Frederick Muriuki Muriithi; 4 of 4 tasks done
...to change privileges for phenotype data, you have to do it trait by trait (or at least to a selection of traits you manually choose). But for mRNA ("ProbeSet") traits you can just refer to the entire...
- Prevent Weak Passwords
issue opened on Feb 27 2024 by Frederick Muriuki Muriithi
...-request, feature request
## Description
=> https://matrix.to/#/!mBYtTotZGiPpHmjJnI:matrix.org/$yaw0uk-JyHGBC8Jw-b2I1VhGoaWwNEO_eOiSAO8RSDs?via=matrix.org
> pjotrp
> how do we prevent weak passwords...
- Replace Redis with SQL
issue opened 7 weeks ago by Frederick Muriuki Muriithi
...-request, feature request
* keywords: gn-uploader, uploader, redis, sqlite, sqlite3
## Description
We currently (as of 2024-06-27) use Redis for tracking any asynchronous jobs (e.g. QC on uploaded...
- Provide Page/Link for/to Uploaded Data
issue opened on Jul 10 2024 by Frederick Muriuki Muriithi
...feature request, feature-request
* keywords: gn-uploader, uploader, data dashboard
## Description
Once a user has uploaded their data, provide them with a landing page/dashboard for the data they...
- Link Authentication/Authorisation
issue opened on Jun 24 2024 by Frederick Muriuki Muriithi
...critical
* type: feature request, feature-request
* keywords: gn-uploader, gn-auth, authorisation, authentication, uploader, upload
## Description
The last chain in the link to the uploads is...
- Send out Confimation Emails on Registration
✓ issue opened on Feb 27 2024 by Frederick Muriuki Muriithi, last updated on Sep 16 2024 by Frederick Muriuki Muriithi
...feature request, feature-request
* keywords: gn-auth, email, user registration, email confirmation
## Description
Send out a emails to confirm that the emails users provide are valid. Probably add...
- Show Last Edited
issue opened on Jul 24 2023 by Frederick Muriuki Muriithi
...request
* priority: medium
* assigned: fredm
* keywords: editing
* status: open
## Description
Following the GNSoC Plenary meeting of Thursday, 20 July 2023, a request was made to add a "Edited by ...
- Enable User Masquerade
✓ issue opened on May 22 2023 by Frederick Muriuki Muriithi, last updated on May 23 2023 by Frederick Muriuki Muriithi
...request
## Description
To enable debug of issues, or to support some user request, we need to build in a masquerade feature to enable the system admin to masquerade as a particular user and perform...
- gn-uploader: Resume Upload
✓ issue opened on Jun 24 2024 by Frederick Muriuki Muriithi, last updated on Jul 03 2024 by Frederick Muriuki Muriithi; 4 of 4 tasks done
...flisso
* type: feature request, feature-request
* keywords: gn-uploader, uploader, upload, resume upload
## Description
If a user is uploading a particularly large file, we might need to provide...
- New Privileges: Samples Ordering
issue opened on Sep 19 2024 by Frederick Muriuki Muriithi
...-request, feature request
* keywords: gn-auth, auth, privileges, samples, ordering
## Description
From the email thread:
```
Regarding the order of samples, it can basically be whatever we decide...
- Sort by Attributes
✓ issue opened on May 31 2024 by Frederick Muriuki Muriithi, last updated on May 31 2024 by Zachary Sloan
...-request, feature request
* priority: high
* status: closed
* keywords: genenetwork2, sorting, attributes
## Description
From the email:
> This trait:
>
> https://genenetwork.org/show_trait?trait_id...
- Render images in tissue web output
✓ issue opened on Apr 20 2022 by Arun Isaac, last updated on Jul 06 2022 by Arun Isaac
...feature request
* assigned: aruni
Links in gemtext that point to images should render as images rather than as links. This way it will be possible to inline images in issues.
tissue now has its own...
- Show "Edit" Button for All Users
✓ issue opened on Jul 24 2023 by Frederick Muriuki Muriithi, last updated on Jul 24 2023 by Frederick Muriuki Muriithi
...feature request
* assigned: fredm
* priority: high
* keywords: editing
* status: closed
## Description
Show the "Edit" button for all users, but only allow users with the appropriate permissions only...
- Delete Rejected Diffs from Database
✓ issue opened on Jul 25 2023 by Frederick Muriuki Muriithi, last updated on Jul 25 2023 by Frederick Muriuki Muriithi
...type: feature request
* status: closed
* assigned: fredm
* keywords: editing, metadata audit
* priority: high
## Description
The rejected diffs will be maintained, but will simply not be shown.
- Use "Authorisation Code Flow" for Authentication
✓ issue opened on May 08 2023 by Frederick Muriuki Muriithi, last updated on May 22 2023 by Frederick Muriuki Muriithi
...feature request, improvement
## Description
We use OAuth2 for our auth(entic|oris)ation system.
Currently, the system is making use of the "Password Grant Flow"[0] which was easy to implement and use...
- Paginate Resources Page
issue opened on Jul 27 2023 by Frederick Muriuki Muriithi
...request
## Description
Some of the Resources have too many data items linked, which leads to the page freezing when loaded.
Pagination will help aleviate the issue in those situations.
We also need...
- Quality Control of Data in Uploaded R/qtl2 Bundles
✓ issue opened on Feb 02 2024 by Frederick Muriuki Muriithi, last updated on Sep 16 2024 by Frederick Muriuki Muriithi; 10 of 15 tasks done
...request
* priority: medium
* keywords: quality control, QC, R/qtl2 bundle
## Description
Currently (2024-02-02T05:41+03:00UTC), the code simply allows the upload of data, doing the bare minimum...