- Global Search: Unhandled Error
✓ issue opened on Mar 04 2024 by Frederick Muriuki Muriithi, last updated on Sep 16 2024 by Frederick Muriuki Muriithi
...attempting to read and/or process expected data.
## Closing Comments
This issue is closed as obsoleted. The issue is really old (>=7 months). Closing it for now. To be reopened if the issue happens...
- BXD102xBXD077F1 Error
✓ issue opened on Mar 22 2022 by Frederick Muriuki Muriithi, last updated on Apr 07 2022 by Zachary Sloan
...trait_id=1448231_at&dataset=HC_M2_0606_P
>
> jacs123
I (fredm) tried this out, and it seems there is still an issue here.
This appears to no longer be an issue; it was probably addressed along...
- 'TempDataSet' object has no attribute 'query_for_group' (error)
✓ issue opened on Mar 22 2022 by Frederick Muriuki Muriithi, last updated on Sep 28 2022 by Alexander_Kabui
...might also be interested in this issue
## Notes 28/9/22
this issue has not being reported for a while since jul 16,2021
The error is also not reproducible
closing down this until a new issue is raised
- Redesign Global Search Design
✓ issue opened on Sep 26 2024 by Alexander_Kabui, last updated on Oct 16 2024 by Alexander_Kabui; 2 of 2 tasks done
...NCBI PubMed model.
* [x] Replace the "?" button that acts as a user guide
## Related issues:
=> https://issues.genenetwork.org/issues/cleanup-base-file-gn2
## Notes
PR that seeks to address this issue...
- Global search does not close connections properly (and is slow)
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 14 2022 by Arun Isaac
...file info.
In fact, every row in the table has a SQL query that does not close the connection properly.
## Resolution
The new xapian search does not use the SQL database at all. Therefore issue may...
- Global search problems
✓ issue opened on Aug 26 2022 by Pjotr Prins, last updated on Oct 14 2022 by Arun Isaac; 1 of 2 tasks done
...render results in table
* [ ] 'Brca2' with quotes gives a SQL error, see
=> http://genenetwork.org/gsearch?type=gene&terms=%27Brca2%27
## Resolution
With the new xapian search, this issue is no more.
- correlation error: 'NoneType' object is not iterable
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Apr 13 2022 by Alexander Kabui
.../wqflask/wqflask/correlation/show_corr_results.py", line 473, in process_samples
for sample in sample_names:
```
## notes
codebase for gn2 correlation had a rewrite
and this is no longer an issue
- Automatically find broken links on GN2
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi; 2 of 2 tasks done
...moved the new gn2 CI
### Resolution
This was added to Mechanical Rob here:
=> https://github.com/genenetwork/genenetwork2/pull/555
Making Mechanical Rob should it fail is an entirely different issue.
- Capture Data on the BXDs in RDF
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi
...dumping RDF has already been done in:
=> https://github.com/genenetwork/dump-genenetwork-database dump-genenetwork-database
Also, vector/matrix data should be put in lmdb, and this is a separate issue...