- Fallbacks
document created on Feb 18 2024 by Pjotr Prins, last updated on Apr 09 2024 by Pjotr Prins
...system administration
* keywords: system administration, GN, tux01, tux02, tux04, balg01
# Tasks
## Prepare backups to copy to the new machines
Note that copying from the new machines is 10x faster.
- Fire up system container for GN
document created on Mar 02 2024 by Pjotr Prins, last updated on Apr 05 2024 by Pjotr Prins
...system administration
* keywords: system administration, GN, tux01, tux02, tux04, balg01
# Tasks
We have the following check list
* [ ] Create a system definition
* [ ] Fire up container and get...
- COVID-19
document created on Nov 14 2021 by Pjotr Prins, last updated on Mar 16 2022 by Frederick Muriuki Muriithi
...for COVID-19 using Arvados as the underlying infrastructure.
## Tasks
=> https://github.com/yatisht/usher Fast phylogeny
## Tags
* assigned: pjotrp
* priority: unclear
* type: system administration...
- Each shepherd service needs its own guix profile.
issue opened on Nov 03 2021 by Efraim Flashner, last updated on Jun 21 2024 by Pjotr Prins
...(genecup)
* genecup
* gitea
* ipfs
* power
* rn6app
* singlecell
## Tags
* assigned: efraim, pjotrp
* type: bug
* status: in progress
* priority: high
* keywords: shepherd, system administration
- Octopus sysmaintenance
issue opened on Oct 12 2021 by Pjotr Prins, last updated 6 weeks ago by Pjotr Prins; 1 of 8 tasks done
...efraimf, erikg, andreag
* priority: high
* status: open
* type: system administration
* keywords: systems, octopus
# Tasks
* [X] add lizardfs to nodes
* [ ] add PBS to nodes
* [ ] use fiber optic...
- Decommission machines
issue opened on Oct 06 2021 by Pjotr Prins, last updated on Sep 22 2023 by Pjotr Prins; 11 of 22 tasks done
...system administration
* status: unclear
# Tasks
## Running (OK)
* rabbit is used for backups (R815 - 2010 model - , 24core, AMD, 64G, 5TB: pjotr, root)
## Still running old Linux
* [ ] xeon (1950...
- GN1 github problem
issue opened on Dec 17 2022 by Pjotr Prins
...system administration
* keywords: systems, tux02, production, gn1
# Info
To solve this I have to remove the large file(s). Fortunately not many people are using genenetwork1 code base, so I can...
- Tux02 Production
issue opened on Oct 07 2021 by Pjotr Prins, last updated on Jun 13 2025 by Pjotr Prins; 17 of 22 tasks done
...medium
* type: system administration
* keywords: systems, tux02, production
## Tasks
* [X] update guix guix-1.3.0-9.f743f20
* [X] set up nginx (Debian)
* [X] test ipmi console
* [X] test ports (nginx)...
- Rebooting the GN production machine(s)
issue opened on Jan 01 2022 by Pjotr Prins, last updated on Oct 06 2022 by Pjotr Prins; 4 of 4 tasks done
...not on Tux01 yet
=> https://lkml.org/lkml/2021/2/17/970
In our case a simple reboot worked, fortunately.
## Tags
* assigned: pjotrp
* status: unclear
* priority: medium
* type: system administration...
- GN1 Time machines
issue opened on Oct 07 2021 by Pjotr Prins, last updated on Jul 01 2022 by Arun Isaac
...MYD
```
so you can see all the different versions. The matching code bases should be there too.
## Tags
* assigned: pjotrp, efraimf
* priority: high
* status: unclear
* type: system administration...
- GN2 Time Machines
issue opened on Aug 19 2022 by Pjotr Prins, last updated on Sep 05 2022 by Alexander_Kabui; 4 of 10 tasks done
...system administration
* keywords: systems, production
## Tasks
Also a time line:
* [X] Install machine software and physical (est. 4-8 hours)
* [X] Sync backups on a daily basis and add monitoring (2...