- Quality Control Checks
✓ issue opened on Nov 17 2021 by jgart, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
...C57BL/6
D2 -> DBA/2
3. Probeset IDs that don't have any values should be pruned:
For example an Affymetrix data set might have ~28,000 entries and the data set that
is allowed into the GeneNetwork...
- UI Design
✓ issue opened on Dec 01 2021 by jgart, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
...Group are you using?"
> (AKXD, BXH, Mouse Diversity Panel, BXD)
3. "What is your platform?"
> (Aff, Ilumina, ...)
If Affymetrix (Aff) is selected then there should be various options
like Clarion S.
- Rewrite qc and qc-uploads in Python3
✓ issue opened on Apr 11 2022 by Frederick Muriuki Muriithi, last updated on Nov 28 2023 by Frederick Muriuki Muriithi
...(s) were developed by
* jgart
and were written in Common-Lisp. The two applications are:
=> https://git.genenetwork.org/jgart/qc QC library
=> https://git.genenetwork.org/jgart/qc-uploads QC App Front-...
- Quality Control of Data in Uploaded R/qtl2 Bundles
✓ issue opened on Feb 02 2024 by Frederick Muriuki Muriithi, last updated on Sep 16 2024 by Frederick Muriuki Muriithi; 10 of 15 tasks done
...Check that the values do not exceed 20 -- This is probably wrong, e.g. `mth.log2(3472935867452934)=51.62507719292422`
## Resources
* [1]: Description rules: https://info.genenetwork.org/faq.php#q-22