- Quality Control Project
✓ issue opened on Nov 19 2021 by Arthur Centeno, last updated on Jul 20 2022 by Frederick Muriuki Muriithi
Quality Control Project
Develop an app with a web interface to automate the job of cleaning tsv data
files for entry. The app would be used by a group of users on a network to
upload data.
QC should...
- Rewrite qc and qc-uploads in Python3
✓ issue opened on Apr 11 2022 by Frederick Muriuki Muriithi, last updated on Nov 28 2023 by Frederick Muriuki Muriithi
...anything else. Most programming languages these days have facilities for translating the line endings appropriately, and so, we really should not add the manual cognitive overhead to the users, unless...
- Big File Upload Fails
✓ issue opened on Jan 17 2023 by Frederick Muriuki Muriithi, last updated on Nov 28 2023 by Frederick Muriuki Muriithi
...big files (>= 500MB) fails quietly, dropping the user back to the home page.
### Troubleshooting
This issue is reproducible on https://bioart.io/ but not locally.
There is an error in the Apache2 logs...
- Read Samples/Cases/Individuals From Database
✓ issue opened on Jan 20 2024 by Frederick Muriuki Muriithi, last updated on Feb 27 2024 by Frederick Muriuki Muriithi
...was a myopic view of the data uploader, and needs to be expanded significantly. The user will need to specify the species for the data they wish to upload before being allowed to upload. That implies...
- Quality Control of Data in Uploaded R/qtl2 Bundles
✓ issue opened on Feb 02 2024 by Frederick Muriuki Muriithi, last updated on Sep 16 2024 by Frederick Muriuki Muriithi; 10 of 15 tasks done
...averaging values, then the user could provide the corresponding "standard error" file(s).
Has similar QC checks to those for the "pheno" file(s) above. The number of decimal places might vary, however.