- Slow query
issue opened on May 27 2023 by Pjotr Prins, last updated on May 29 2023 by Pjotr Prins; 0 of 2 tasks done
...query.
## Indices
ProbeSet has a large number of columns, indices and full text indices(!)
## Nailing it down
The obvious thing to try is to reduce the query and see what speeds it up again. So, let's...
- AI UI Enhancements
issue opened on Mar 01 2024 by Pjotr Prins; 0 of 3 tasks done
...GN searched for the term(s) "shh" in 754 datasets and 39,765,944 traits across 10 species
and found 1210 results that match your query.
You can filter these results by adding key words in the fields...
- rewrite sampledata fetching with genofiles using scheme
issue opened on Jul 19 2023 by Alexander_Kabui, last updated on Jul 26 2023 by Alexander_Kabui; 2 of 6 tasks done
.../data-vault-2
### TODOS
* [x] reading the genofile
* [x] parsing the genofile to obtain the sample names,metadata
* [] adding unit tests for the module
* [] query statements fetch sampledata...
- Add track for showing which regions in mouse/rat correspond to human regions to the mapping figure
issue opened on Jul 21 2022 by Zachary Sloan, last updated on Sep 14 2022 by Pjotr Prins
...showing homology across mouse/human/maybe rat (done for mouse, won't be hard to also enable for other species)
[ ] Make it display an arrow depending on the strand (whether the query strand matches...
- Annotate traits page with metadata from RDF
✓ issue opened on Sep 30 2022 by Munyoki Kilyungi, last updated on Dec 15 2022 by Munyoki Kilyungi; 16 of 16 tasks done
...query for the trait:
```
PREFIX gn: <http://genenetwork.org/>
SELECT ?name ?dataset ?dataset_group ?title ?summary ?aboutTissue ?aboutPlatform ?aboutProcessing
WHERE {
?dataset gn:accessionId "GN112"...
- Fallback issues
issue opened on Mar 22 2024 by Pjotr Prins, last updated on Apr 05 2024 by Pjotr Prins; 3 of 6 tasks done
...prepare_url
scheme, auth, host, port, path, query, fragment = parse_url(url)
File "/gnu/store/a39cgbdawj9vp24nsz9q25sf9g5vda7c-profile/lib/python3.10/site-packages/urllib3/util/url.py", line 397...