- Annotation
issue opened on Sep 14 2022 by Pjotr Prins, last updated on Mar 14 2023 by Arun Isaac; 0 of 5 tasks done
.../genenetwork2/blob/df36cc808e21202075d32559c9f295087bd8aee2/wqflask/base/trait.py#L528-L597
where max LRS locus position is fetched for traits
=> https://github.com/genenetwork/genenetwork2/blob/...
- Parsing genotyfiles
issue opened on Jul 11 2023 by Alexander_Kabui
...the genofile identify
the file in the GENOTYPE_FILES and extract sample_listx
for entire parsing code refer to:
=> https://github.com/genenetwork/genenetwork3/blob/main/gn3/db/genotypes.py
* Linked...
- Wrong CSV in ITP_10001 longevity dataset
✓ issue opened on Apr 11 2022 by BonfaceKilz, last updated on Apr 12 2022 by BonfaceKilz
.../gn-gemtext-threads/blob/main/pictures/ITP_10001-error.png
## Tasks
- [X] Reproduce the issue
- [X] Check if database is affected in any way
- [X] Send a patch to fix
- [X] Notify every relevant user...
- Fallbacks and backups
issue opened on Aug 31 2021 by Pjotr Prins, last updated on Jun 28 2024 by Pjotr Prins; 3 of 25 tasks done
.../gn-services/blob/master/services/backups.org BACKUPS
As epysode was one of the main sheepdog messaging servers I need to reinstate:
* [X] scripts for sheepdog
* [ ] Check tunnel on tux01 is reinstated...
- Investigate and Fix `rm` Command in `rqtl` Logs
issue opened on Jan 08 2025 by Alexander_Kabui, last updated on Jan 09 2025 by Munyoki Kilyungi; 4 of 6 tasks done
.../genenetwork3/blob/main/scripts/rqtl_wrapper.R
The issue is that, upon analyzing the logs for `rqtl`, we see that an `rm` command is unexpectedly invoked:
```
sh: line 1: rm: command not found...
- Designing an issue tracker on gemini
✓ issue opened on Jul 25 2021 by Pjotr Prins, last updated on Feb 02 2022 by Pjotr Prins
.../gn-gemtext-threads/blob/main/issues/database-not-responding.gmi
## Process
We leverage git to pull out dates and people contributions (pjotrp wrote ...) for display in a document/web page. This page...
- Apps
issue opened on Nov 19 2024 by Pjotr Prins, last updated 5 weeks ago by Pjotr Prins; 33 of 74 tasks done
.../singleCellRshiny/blob/6b2a344dd0d02f65228ad8c350bac0ced5850d05/app.R#L167
Let me ask the author Siamak Yousefi. I think we'll drop it.
## longevity
Package definition is at
=> https://git.genenetwork...
- Slow query
issue opened on May 27 2023 by Pjotr Prins, last updated on May 29 2023 by Pjotr Prins; 0 of 2 tasks done
...`Symbol`,`alias`,`GenbankId`,`UniGeneId`,`Probe_Target_Description`),
```
BLOB and TEXT columns also can be indexed, but a prefix length must be given not to exceed the maximum length. In global...