- Investigate and Fix `rm` Command in `rqtl` Logs
issue opened on Jan 08 2025 by Alexander_Kabui, last updated on Jan 09 2025 by Munyoki Kilyungi; 4 of 6 tasks done
...qtl, rqtl, bug, logs
## Description
For QTL analysis, we invoke the `rqtl` script as an external process through Python's `subprocess` module.
For reference, see the `rqtl_wrapper.R` script...
- GN2 Time Machines
issue opened on Aug 19 2022 by Pjotr Prins, last updated on Sep 05 2022 by Alexander_Kabui; 4 of 10 tasks done
...borg which has a 'run_production.sh' script.
Running the script will give feedback
```
su gn2
cd /home/gn2/production/
sh run_production.sh
```
You'll find you need the Guix install of gn2. Starting...
- GN1 Production
issue opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi; 3 of 8 tasks done
...be a hard coded redirect
* [ ] Enable time machines
* [ ] Disable all defunct URLs (needs a script)
* [X] Disable galaxy URL
* [X] Disable EC2 URL
* [X] Disable GN mailing list URL
=> ./gn1-pairscan...
- Annotate traits page with metadata from RDF
✓ issue opened on Sep 30 2022 by Munyoki Kilyungi, last updated on Dec 15 2022 by Munyoki Kilyungi; 16 of 16 tasks done
...exposed to many other RDF sources that use different ontology was confusing.
## Fetch metadata - datasets - using RDF
* [X] Initial experimentation in python-script + demo to the team.
The submitted...
- GN1 annotation page broken
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Dec 17 2022 by Pjotr Prins; 0 of 2 tasks done
...replace the mysql connectors with mysqli - a newer driver for PHP. For this we use a translation script from
=> https://github.com/rubo77/php-mysql-fix/blob/master/fix_mysql.inc.php
that gets included...