- Allow analyses to be done between traits from "individuals" groups and their corresponding "main" group
issue opened on Jul 21 2022 by Zachary Sloan
...Currently you can't do an analysis beween traits from the "main" BXD group and traits from any of the BXD individuals groups, but it should technically be possible to do so as long as there's...
- Fetch trait names for phenotypes
issue opened on Mar 22 2022 by Frederick Muriuki Muriithi
...returns detailed information for transcript expression traits, but not for traits from the 'Publish' database.
### Describe the solution you'd like
For example, downloading the data as CSV via the web...
- Multi-trait heat map failed
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi
...traits from phenotype correlations to Ap3m2 in the hippocampus.
Selected "Heat Map"
```
GeneNetwork tux01:gene:2.11-rc2-production-2abbf82b4 http://gn2.genenetwork.org/heatmap (11:25AM UTC Sep 17...
- Capture Data on the BXDs in RDF
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi
...-traits-page Annotate traits page with metadata from RDF
Work on dumping RDF has already been done in:
=> https://github.com/genenetwork/dump-genenetwork-database dump-genenetwork-database
Also, vector/...
- Annotate traits page with metadata from RDF
✓ issue opened on Sep 30 2022 by Munyoki Kilyungi, last updated on Dec 15 2022 by Munyoki Kilyungi; 16 of 16 tasks done
Annotate traits page with metadata from RDF
* assigned: bonfacem
* priority: high
* status: in progress
* keywords: rdf, critical, metadata
Read the design-doc here:
=> /topics/add-metadata-...
- Zoomed mapping result are empty for certain traits
issue opened on Apr 11 2022 by Zachary Sloan, last updated on Apr 13 2022 by Zachary Sloan
Zoomed mapping result are empty for certain traits
From RWW: For the following trait, if you zoom into a range for a specific Chromosome by clicking the top pink bar ("8x expanded WebQTL map") no...
- Add the option to save traits uploaded with the Submit Trait option
issue opened on Jul 19 2022 by Zachary Sloan
...save traits uploaded with the Submit Trait option
# Tags
* assigned: zsloan
* priority: medium
* type: feature-request
* status: open, in progress
* keywords: data, meta-data
# Description
Current the...
- Annotation
issue opened on Sep 14 2022 by Pjotr Prins, last updated on Mar 14 2023 by Arun Isaac; 0 of 5 tasks done
...L528-L597
where max LRS locus position is fetched for traits
=> https://github.com/genenetwork/genenetwork2/blob/df36cc808e21202075d32559c9f295087bd8aee2/wqflask/wqflask/do_search.py#L819-L857 - Search...
- Adding principal component to collection returns an error
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Apr 07 2022 by Alexander Kabui
...py", line 194, in view_collection
name, dataset_name = atrait.split(':')
ValueError: not enough values to unpack (expected 2, got 1)
```
### To Reproduce
* Add transcript traits...
- AI UI Enhancements
issue opened on Mar 01 2024 by Pjotr Prins; 0 of 3 tasks done
...GN searched for the term(s) "shh" in 754 datasets and 39,765,944 traits across 10 species
and found 1210 results that match your query.
You can filter these results by adding key words in the fields...
- Fix GN1 Network Graph
issue opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
...def __init__(self, fd, matrix,
traits, imageHtmlName, imageName, pdfName, nodes,
web/webqtl/networkGraph/networkGraphPageBody.py: a <a href="%s" class="normalsize" target="_blank">PDF file...
- Fetch trait data using genofiles
issue opened on Jul 11 2023 by Alexander_Kabui, last updated on Jul 13 2023 by Alexander_Kabui; 2 of 3 tasks done
...6.50013 | 0.175722 | NULL | B6D2F1 | Status=Live,Strain=B6D2F1,RRID=JAX:100006,Epoch=0,SeqCvge= |
```
Fetch specific traits
```sql
SELECT
Strain.Name, ProbeSetData.value...