- GN1 Production
issue opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi; 3 of 8 tasks done
...Rob 14 Sep 2021)
* [ ] Fix annotating metadata - or do we have GN2 alternative?
=> gn1-slowness.gmi [.] Clean up tmp dirs with CRON
=> gn1-mapping-broken.gmi [ ] Marker regression is broken
* [ ] Fix...
- Fallbacks and backups
issue opened on Aug 31 2021 by Pjotr Prins, last updated on Jun 28 2024 by Pjotr Prins; 3 of 25 tasks done
...reinstated
* [ ] enable trim
* [ ] reinstate monitoring web services
* [ ] reinstate daily backups
* [ ] CRON
* [ ] make sure messaging works through redis
* [ ] fix and propagate GN1 backup
* [ ] fix...
- GN1 annotation page broken
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Dec 17 2022 by Pjotr Prins; 0 of 2 tasks done
.../rubo77/php-mysql-fix/blob/master/fix_mysql.inc.php
that gets included with
```
include_once('../includes/fix_mysql.inc.php')
```
At the final step we have to fix CKEDITOR
## CKEDITOR
FF console says...
- Fix Broken Global Search UI
issue opened on Jan 07 2025 by Alexander_Kabui, last updated on Jan 07 2025 by Alexander_Kabui; 0 of 2 tasks done
Fix Broken Global Search UI
## Tags
* Assigned: alexm, zsloan
* Priority: high
* status: in progress
* Keyword : search, UI, bug, Refactor
* Type: UI, bug
## Description
The Global search UI layout...
- Investigate and Fix `rm` Command in `rqtl` Logs
issue opened on Jan 08 2025 by Alexander_Kabui, last updated on Jan 09 2025 by Munyoki Kilyungi; 4 of 6 tasks done
Investigate and Fix `rm` Command in `rqtl` Logs
## Tags
* assigned: alex, bonfacem
* type: Bug
* status: in progress
* keywords: external, qtl, rqtl, bug, logs
## Description
For QTL analysis...
- Marker covariates implemented wrong in rqtl_wrapper.R
issue opened on Sep 22 2021 by Zachary Sloan, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
...of marker covariates in rqtl_wrapper.R is wrong. For the time being,
I've removed this option. Currently just waiting on Danny to get back to me with the fix (which I'll then add to rqtl_wrapper.R)...
- Automatically find broken links on GN2
✓ issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi; 2 of 2 tasks done
gn2 CI runs on the background after for any push
raises an error if any broken link is found
On gn2 web pages all missing links that are found
are underlined and highlighted with red for later fix...
- Wrong CSV in ITP_10001 longevity dataset
✓ issue opened on Apr 11 2022 by BonfaceKilz, last updated on Apr 12 2022 by BonfaceKilz
...is affected in any way
- [X] Send a patch to fix
- [X] Notify every relevant user
- [X] Update case-attr page with links
## Notes
### Mon 11 Apr 2022 13:19:14 EAT:
The CSV file is technically fine.
- Fix GN1 Network Graph
issue opened on Sep 15 2021 by Pjotr Prins, last updated on Mar 14 2022 by Frederick Muriuki Muriithi
Fix GN1 Network Graph
Status: the network graph works on production. PDF output is empty, however.
## Tags
* type: bug
* priority: high
* keywords: GN1, Network Graph
* status: in progress
* kanban...
- Apps
issue opened on Nov 19 2024 by Pjotr Prins, last updated on Mar 23 2025 by Pjotr Prins; 33 of 74 tasks done
...guix root
* [X] - make sure it works on reboot (systemd)
* [-] singlecell (siamak)
* [-] rn6app (hao - remove)
* [-] genome-browser (defunct)
To fix them we need to validate the sheepdog monitor...
- CD is slow
issue opened on Jul 20 2025 by Pjotr Prins, last updated on Jul 24 2025 by Pjotr Prins; 2 of 8 tasks done
...GN2
* [ ] Fix GN3 hook for github (it is not working)
* [X] gn-guile lacks certificates it can use for sparql
# Measuring
bonfacekilz:
I'm currently instrumenting the requests. See what hogs up time.
- Fallback issues
issue opened on Mar 22 2024 by Pjotr Prins, last updated on Apr 05 2024 by Pjotr Prins; 3 of 6 tasks done
...propagated inputs. Now we still have the output error. There is no information the Rscript has actually been invoked and successfuly (or unsuccessfully) wrote the file. To fix this we mount the GN3...