- Temporary Traits Access Concerns
issue opened on Aug 03 2023 by Frederick Muriuki Muriithi
...access control
## Description
The temporary traits feature allows users to quickly upload and use data for their analyses. They are also created as computational artifacts of the correlation matrix...
- Quality Control of Data in Uploaded R/qtl2 Bundles
✓ issue opened on Feb 02 2024 by Frederick Muriuki Muriithi, last updated on Sep 16 2024 by Frederick Muriuki Muriithi; 10 of 15 tasks done
...keywords: quality control, QC, R/qtl2 bundle
## Description
Currently (2024-02-02T05:41+03:00UTC), the code simply allows the upload of data, doing the bare minimum in terms of quality control.
- Link Authentication/Authorisation
issue opened on Jun 24 2024 by Frederick Muriuki Muriithi
...upload
## Description
The last chain in the link to the uploads is the authentication/authorisation. Once the user uploads their data, they need access to it. The auth system, by default, will deny...
- gn-uploader: Resume Upload
✓ issue opened on Jun 24 2024 by Frederick Muriuki Muriithi, last updated on Jul 03 2024 by Frederick Muriuki Muriithi; 4 of 4 tasks done
...upload, resume upload
## Description
If a user is uploading a particularly large file, we might need to provide a way for the user to resume their upload of the file.
Maybe this can wait until...
- Clean up Authorisation
✓ issue opened on Nov 19 2021 by BonfaceKilz, last updated on Dec 04 2023 by Frederick Muriuki Muriithi; 4 of 4 tasks done
...gave the decorator access to them with request.form,
they didn't match the variable names it expected). So I'm not
really sure how best to fix this; I'm guessing that either the >
trait/update...
- Feature Request: Create Test Accounts
issue opened on Sep 16 2024 by Frederick Muriuki Muriithi, last updated on Sep 17 2024 by Frederick Muriuki Muriithi
...deleted.
* What happens to any data uploaded by these accounts? They should probably not upload data meant to be permanent. All their data might need to be deleted along with the temporary accounts.
- Migrate User Accounts from Redis to new Auth DB
✓ issue opened on Dec 22 2022 by Frederick Muriuki Muriithi, last updated on May 22 2023 by Frederick Muriuki Muriithi
...authorisation, oauth2
* type: feature request
## Description
After some discussion, this issue was deemed unnecessary.
Users will have to register anew and their access details reconfirmed.
- Build Registration Page for OAuth2 Clients
✓ issue opened on Dec 22 2022 by Frederick Muriuki Muriithi, last updated on May 30 2023 by Frederick Muriuki Muriithi
...OAuth2 clients that users can use to access the GN3 service with the new auth system.
Fixed with commits
=> https://github.com/genenetwork/genenetwork3/commit/25c6da03e1639895f0051e8be6502762beefde0b...
- Sort by Attributes
✓ issue opened on May 31 2024 by Frederick Muriuki Muriithi, last updated on May 31 2024 by Zachary Sloan
...js were moved into table_functions.js so they could be used by more pages.
In this case, the trait page needed access so that the case attribute columns could be sorted such that NA/NULL value
are...
- Rework Resources
✓ issue opened on Sep 06 2023 by Frederick Muriuki Muriithi, last updated on Feb 27 2024 by Frederick Muriuki Muriithi; 2 of 3 tasks done
...2024-02-27
The resource system was updated a while ago.
We still do not view users as resources for the time being, and handle them slightly different from the rest of the system, controlling access...