- Search results presentation
issue opened on Apr 04 2023 by Alexander_Kabui
...results in global search
Currently the results are displayed in tabular form and too many columns are presented to user overlapping the page
Design should be simple and eye catching to user
links...
- Enable all DataTables to call the same code
issue opened on Jul 26 2022 by Zachary Sloan, last updated on Jul 27 2022 by Zachary Sloan
...Results
[X] - Collection View
[X] - Collection List
[X] - Correlation Results
[X] - Global Search
[X] - Trait Page Sample Table
[X] - Mapping Results
[ ] - Interval Analyst ( might not convert...
- Search results for SNP looks weird
issue opened on Mar 23 2022 by Frederick Muriuki Muriithi, last updated on Oct 12 2022 by Munyoki Kilyungi
...results for GN2 look off.
Here's how it looked like in the past:
=> https://user-images.githubusercontent.com/11820306/82554424-8e0ac600-9b6e-11ea-9a50-f53506eb44a5.png Screen Shot 2020-05-20 at 10 01...
- AI UI Enhancements
issue opened on Mar 01 2024 by Pjotr Prins; 0 of 3 tasks done
...754 datasets and 39,765,944 traits across 10 species
and found 1210 results that match your query.
You can filter these results by adding key words in the fields below
and you can also sort results...
- Linking genotype files to datasets
issue opened on Jul 07 2023 by Alexander_Kabui, last updated on Jul 11 2023 by Alexander_Kabui
...InbredSet
WHERE
GenoFreeze.InbredSetId = InbredSet.Id AND
InfoFiles.InfoPageName = GenoFreeze.ShortName
ORDER BY GenoFreeze.CreateTime
DESC
results for example related files are
```sql
results...
- Investigate and Fix `rm` Command in `rqtl` Logs
issue opened on Jan 08 2025 by Alexander_Kabui, last updated on Jan 09 2025 by Munyoki Kilyungi; 4 of 6 tasks done
...stdout.
run_id: Unique ID to identify the process.
Returns:
A dictionary with the results, indicating success or failure.
"""
cmd.append(" && rm") # Injecting potentially...
- Zoomed mapping result are empty for certain traits
issue opened on Apr 11 2022 by Zachary Sloan, last updated on Apr 13 2022 by Zachary Sloan
...to be caused by marker namees being duplicated. If a marker name appears in an earlier chromosome, it ends up displayed first in the GEMMA results for a later chromosome.
For example, if rs0000000071...
- Gn Markdown Editor implementation
issue opened on Aug 07 2023 by Alexander_Kabui, last updated on Sep 11 2023 by Alexander_Kabui; 4 of 5 tasks done
...Editor implementation
### Notes
Gn renders multiple markdown pages as html,the idea of this project is to allow users to edit and live preview the results
also added to this is the ability to commit...
- Fetch trait data using genofiles
issue opened on Jul 11 2023 by Alexander_Kabui, last updated on Jul 13 2023 by Alexander_Kabui; 2 of 3 tasks done
...this
```
DATASET_NAME:HC_M2_0606_P
TRAIT: 1454998_at
GROUP: BXD
//expected results are[id,strain,Value, CaseAttributes data()] using the genofiles
```
### TODOS
* [x] indentify all required fields...
- Slow query
issue opened on May 27 2023 by Pjotr Prins, last updated on May 29 2023 by Pjotr Prins; 0 of 2 tasks done
...This made the query fast again (100K results in 2s).
## Further reading
=> https://dba.stackexchange.com/questions/75091/why-are-simple-selects-on-innodb-100x-slower-than-on-myisam
- GN Markdown Editor Integration
issue opened on Jun 07 2024 by Alexander_Kabui, last updated on Aug 22 2024 by Alexander_Kabui; 9 of 10 tasks done
...tree clean",
"commit_sha": "ecd96f27c45301279150fbda411544687db1aa45"
}
```
If the request fails, the expected results are:
```json
{
"error": "<error_type>",
"msg": "Commits do not match. Please pull...
- Fallback issues
issue opened on Mar 22 2024 by Pjotr Prins, last updated on Apr 05 2024 by Pjotr Prins; 3 of 6 tasks done
...pair scan results!
=> https://gndev.genenetwork.org/show_trait?trait_id=10150&dataset=BXDPublish
Takes about a minute for 26 mice. The csv files are generated in /tmp/gn3, but no image. The relevant...