- Report invalid search queries passed to the search API
issue opened on Feb 15 2023 by Arun Isaac, last updated on Apr 04 2023 by Alexander_Kabui
...produce a good stacktrace. The genenetwork3 API should do a better job of communicating errors.
In particular, for the search API, we should start with correctly reporting invalid search queries so...
- Annotate traits page with metadata from RDF
✓ issue opened on Sep 30 2022 by Munyoki Kilyungi, last updated on Dec 15 2022 by Munyoki Kilyungi; 16 of 16 tasks done
[X] Explore federated queries using wikidata/Uniprot
This demo was unsatisfactory; but nevertheless, I have a good understanding of how federated queries work. My findings are: federated queries...
- Troubleshoot response inconsistencies for GN-llm
issue opened on Jan 10 2024 by Alexander_Kabui
...There are discrepancies when asking questions on Qnqa using Fahamu. Sometimes, responses take too long, and related queries with differing sentence structures may result in no response. There...
- Annotation
issue opened on Sep 14 2022 by Pjotr Prins, last updated on Mar 14 2023 by Arun Isaac; 0 of 5 tasks done
.../do_search.py#L819-L857 - Search queries
notably the Position Search (the most "ambitious" version of this would allow for querying based off of different assemblies, but I can't think of a good way...
- Slow query
issue opened on May 27 2023 by Pjotr Prins, last updated on May 29 2023 by Pjotr Prins; 0 of 2 tasks done
...Buffer Pool is too small, you could be caching pages, invalidating pages, and removing pages all in one query.
I note that the mysql configuration on tux01 differs from tux02. But both these queries...